BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64860.1
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496706 jgi|Araly1|496706|fgenesh2_kg.8__2522__AT5G64860.1 2728 0.0
> Ahg496706 jgi|Araly1|496706|fgenesh2_kg.8__2522__AT5G64860.1
Length=1895
Score = 2728 bits (1477), Expect = 0.0
Identities = 1785/1923 (93%), Gaps = 63/1923 (3%)
Strand=Plus/Plus
Query 28 GGAGTGGAGCTTTGAATTGGATGATCATTATCCATGTCGATTCTACTTAGGCCGTCGTCC 87
|||||||||||||||||| ||||||||||||||||||||| | | |||| | | |||
Sbjct 1 GGAGTGGAGCTTTGAATT-GATGATCATTATCCATGTCGA-T-T-CTTA-G-C-TCG--- 50
Query 88 TCTCCTTCACTCTGTTCTTCTCTCAAGCTTTTCCGATTATCCTCTCCGGAT-TCTTTAAT 146
|||||||||||||||||||||||| |||||||||||||||||||||| | || || ||
Sbjct 51 TCTCCTTCACTCTGTTCTTCTCTCGTTCTTTTCCGATTATCCTCTCCGG-TATCATT-AT 108
Query 147 C-GACGCAGCTGTCCTCAGGAACAGGACAAAGCCGTCGCAGTCGTTTCGAATGGAGGTCG 205
| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 109 CGGACGCAGCTTTCCTCGGGAACAGGATAAAGCCGTCGCAGTCGTTTCGAATGGAGGCCG 168
Query 206 TTTCGAGTAATTCCACGTGTCTTTCTA-GTATTAGCGTCGGTGAAGATTTTCCATCAGAA 264
|||||||||||||||| | | |||| | |||||||||||||||||||||||||| ||||
Sbjct 169 TTTCGAGTAATTCCACTTCTATTTC-ATGTATTAGCGTCGGTGAAGATTTTCCAGCAGAG 227
Query 265 TATGAGCAGTGGCTACCGGTTCCGGATCCAGAGAGCAGGAGAAGAGCTGGCGTTTTGCTA 324
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TATGAGCAGTGGCTGCCGGTTCCGGATCCAGAGAGCAGGAGAAGAGCTGGCGTTTTGCTC 287
Query 325 CACCCGACGTCGTTTCGTGGTCCTCATGGCATTGGTGATCTCGGAGAAGAAGCCTTCCGG 384
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CATCCGACGTCGTTTCGCGGTCCTCATGGCATTGGTGATCTCGGAGAAGAAGCCTTCCGC 347
Query 385 TTCATCGATTGGCTTCATTCTACTGGTTGCTCCGTTTGGCAGGTTCTTCCTCTTGTTCCT 444
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 348 TTCGTCGATTGGCTTCATTCTACTGGTTGCTCCGTTTGGCAGGTTCTTCCTCTGGTTCCA 407
Query 445 CCAGACGAAGGAGGATCTCCTTATGCAGGACAGGATGCAAATTGTGGGAACACATTGTTG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CCAGACGAAGGAGGATCTCCTTATGCAGGACAGGATGCAAATTGTGGGAACACATTGTTG 467
Query 505 ATTTCTCTAGATGAGCTTGTGAAAGACGGCTTGTTAATCAAGGATGAGCTCCCACAACCA 564
|||||||| ||||||||||| || ||||||||| |||| |||||||||||||||||||||
Sbjct 468 ATTTCTCTGGATGAGCTTGTCAAGGACGGCTTGCTAATGAAGGATGAGCTCCCACAACCA 527
Query 565 ATTGATGCTGACTCTGTGAACTATCAGACTGCCAACAAGTTAAAGAGTCCCTTGATTACG 624
|||||| | |||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 528 ATTGATTCCGACTGTGTGAACTATCAAACTGCCAACAAGTTAAAGAGTCCCTTGATAACT 587
Query 625 AAGG-CAGCAAAGAGGCTTATTGATGGCAA-TGGTGAA-CTGAAGAGCAAACTGCTAGAT 681
||| || || || ||| | | ||| | | | || | |||| || | |
Sbjct 588 AAGTTCA-CAC-GA-----ATTCA-G-CAACT--T-ACTCTCATTTTCAAA--GCAA-A- 631
Query 682 TTCCGTAACGACCCCTCTATATCATGTTGGCTTGAAGATGCTGCTTATTTTGCAGCTATT 741
| | | | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 --C-G-A-C--CCC-TCTATATCATGTTGGCTTGAAGATGCTGCTTATTTTGCAGCTATT 683
Query 742 GACAATACTTTAAATGCATACAGTTGGTTTGAGTGGCCTGAACCACTTAAAAACCGTCAT 801
|||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 684 GACAATACTTTAAATGCAGACAGTTGGTTTGAATGGCCCGAACCGCTTAAAAACCGTCAT 743
Query 802 CTTTCTGCCTTGGAAGCTATATATGAAAGCCAAAAGGAGTTTATAGACTTGTTCATTGCT 861
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CTTTCGGCCTTGGAAGCTATATATGAAAGCCAAAAGGAGTTTATAGACTTGTTCATTGCT 803
Query 862 AAGCAATTTTTGTTCCAAAGGCAGTGGCAGAAAGTTCGTGAGTATGCACGGCGGCAAGGA 921
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 804 AAGCAATTTTTGTTCCAAAGGCAGTGGCAGAAAGTTCGTGAGTATGCACGGCAGCAAGGA 863
Query 922 GTTGATATAATGGGAGATATGCCCATTTATGTAGGATATCACAGTGCAGACGTTTGGGCA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GTTGATATAATGGGAGATATGCCCATTTATGTAGGATATCACAGTGCAGACGTTTGGGCA 923
Query 982 AATAAGAAACATTTCTTACTGAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCT 1041
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 924 AATAAGAAACATTTCTTACTGG-CAAG-----CTTTCCTCTTCTTGTTAGCGGTGTTCCT 977
Query 1042 CCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAGCCCTCTTTATGACTGGAAAGCA 1101
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 978 CCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGAAGCCCTCTTTATGACTGGAAAGCA 1037
Query 1102 ATGGAGAGTGACCAATATTCTTGGTGGGTTAATCGAATAAGACGCGCACAGGACTTGTAT 1161
||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1038 ATGGAGAGTGACCAATATTCTTGGTGGGTTAATCGAATACGACGTGCTCAAGACTTGTAT 1097
Query 1162 GACGAATGCAGGATTGATCACTTCAGAGGATTTGCAGGGTTTTGGGCGGTCCCTTCTGAA 1221
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GACGAATGCAGGATTGATCATTTCAGAGGATTTGCAGGGTTTTGGGCGGTCCCTTCTGAA 1157
Query 1222 GCGAAAGTTGCCATGGTTGGACGATGGAAGGTAGGACCTGGAAAGTCATTATTTGATGCC 1281
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1158 GCGAAAGTTGCCATGGTTGGACGATGGAAGGTAGGACCTGGAAAATCTTTATTTGATGCC 1217
Query 1282 ATTTCCAAAGGCGTTGGGAAGATCAAAATCATAGCTGAAGATTTGGGAGTTATTACTAAA 1341
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATTTCCAGAGGCGTTGGGAAGATCAAAATCATAGCTGAAGATTTGGGAGTTATTACTAAA 1277
Query 1342 GATGTAGTTGAGCTGAGGAAATCTATCGGAGCACCTGGAATGGCCGTCCTCCAATTTGCT 1401
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1278 GATGTAGTTGAGCTGAGGAAATCTATAGGAGCGCCTGGAATGGCCGTCCTCCAATTTGCT 1337
Query 1402 TTTGGAGGAGGCGCCGATAACCCACATTTACCTCACAATCATGAAGTAAACCAAGTTGTA 1461
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TTTGGAGGCGGCGCGGATAACCCACATTTACCTCACAATCATGAAGTAAACCAAGTTGTA 1397
Query 1462 TACTCTGGAACTCATGACAACGACACTATTCGAGGCTGGTGGGACACTCTGGACCAAGAA 1521
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1398 TACTCTGGAACTCATGACAACGACACTATTCGAGGTTGGTGGGACACTCTGGACCAAGAA 1457
Query 1522 GAAAAGTCTAAGGCAATGAAATACCTGTCGATAGCTGGAGAAGACGATATATCATGGTCA 1581
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1458 GAAAAGTCTAAGGCAATGAAATACTTGTCGATAGCTGGAGAAGAAGATATATCATGGTCA 1517
Query 1582 GTCATCCAAGCTGCATTCTCTTCAACCGCTCAAACCGCAATCATACCGATGCAAGACATT 1641
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GTGATCCAAGCTGCATTCTCTTCAACCGCTCAAACCGCAATCATACCGATGCAAGACATT 1577
Query 1642 CTAGGACTTGGAAGTTCTGCCAGGATGAACACTCCAGCCACTGAGGTGGGGAATTGGGGT 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 CTAGGACTTGGAAGTTCTGCCAGGATGAACACTCCAGCCACTGAGGTGGGGAATTGGGGT 1637
Query 1702 TGGAGGATTCCAAGTTCAACGAGCTTTGATAATCTTGAAA-CTGAATCTGACAGACTCAG 1760
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1638 TGGAGGATTCCGAGTTCAACGAGCTTTGATAATCT-GAAAACTGAATCTGACAGACTCAG 1696
Query 1761 AGATCTTTTGTCATTGTACGGACGGCTTTGAGGAAAACATTTGACGTGGAAAAGAAGAAG 1820
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1697 AGATCTTTTGTCATTGTACGGACGGCTTTGAGGAAACCTTTTGACGTGGAAGAGAAGAAG 1756
Query 1821 AATCTTTGGTTTTCTTATCTTTTTTGTAACTTTGCTAATGGTAAAA--GCAATAAAGTAA 1878
||||||| |||||||| | ||| ||||||||||||||||||||| | ||||||||||
Sbjct 1757 AATCTTTCGTTTTCTT-T-TTTG--GTAACTTTGCTAATGGTAAAAAAGAAATAAAGTAA 1812
Query 1879 GCAGAAGACGA-ACGAAGCATGTTGTTGAAATAGTGGATCGATGTTG--ATATGGGCCAT 1935
||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1813 --AGAAGACGAGA-GAATCATGTTGTTGAAATAGTGGATCGATGTTGTCATATGGGCTAT 1869
Query 1936 ATA 1938
|||
Sbjct 1870 ATA 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74847331425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5