BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64870.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496707 jgi|Araly1|496707|fgenesh2_kg.8__2523__AT5G64870.1 2429 0.0
Ahg922446 jgi|Araly1|922446|scaffold_103727.1 1842 0.0
Ahg489376 jgi|Araly1|489376|fgenesh2_kg.6__2510__AT5G25250.1 1173 0.0
> Ahg496707 jgi|Araly1|496707|fgenesh2_kg.8__2523__AT5G64870.1
Length=1519
Score = 2429 bits (1315), Expect = 0.0
Identities = 1459/1528 (95%), Gaps = 11/1528 (1%)
Strand=Plus/Plus
Query 5 CACAAACAAACTTGTACT-AGAAAAATCCCTAAATCTCAACAAAACCCTAATTTCAAGGA 63
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 1 CACAAACAAACTCGTA-TCAGAAAAATCCCTAAATCTCAACAAAACCCTAATTTC----A 55
Query 64 AGACGAAGAAAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGG 123
| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 A-A-GAAG-AAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGG 112
Query 124 TGGTGGGATCACAGACATCAAGCTTGCAAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTG 183
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 113 TGGTGGAATCACAGACATCAAGCTTGCCAAGAAGTCATGGGTGTTTCCATGGCAGTCTTG 172
Query 184 CACCGTCTTCGACGTTTCTCCGGTGAACTACACGTTCGAGGTTCAAGCTATGAGTTCCGA 243
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 173 CACCGTCTTCGACGTTTCTCCCGTGAACTACACGTTTGAGGTTCAAGCTATGAGTTCCGA 232
Query 244 GAAACTTCCCTTTGTTATTCCTGCTGTTTTCACAATCGGTCCTCGCGTTGATGATCCTCA 303
||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 233 GAAACTTCCCTTTGTTATTCCGGCGGTTTTCACAATCGGCCCTCGCGTTGATGACCCTCA 292
Query 304 CGCTCTCTTGTTGTATGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAA 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CGCTCTCTTGTTGTACGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAA 352
Query 364 TGAGCTTGTTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTTCCATGACTAT 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 353 TGAGCTTGTTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTGCCATGACTAT 412
Query 424 GGAAGAGGTCTTCAAAGGAACAAAGGAGTTTAAGAAGGAAGTGTTTGACAAGGTTCAGCT 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 413 GGAAGAGGTCTTCAAAGGAACAAAGGAGTTCAAGAAGGAAGTGTTTGACAAGGTTCAACT 472
Query 484 AGAGCTAAACCAGTTTGGTCTTGTGATCTACAACGCCAATGTGAAGCAGCTTGTTGATGT 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 473 AGAGCTAAACCAGTTTGGTCTTGTTATCTACAACGCCAATGTGAAGCAGCTTGTTGATGT 532
Query 544 GCCTGGACATGAGTACTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCAGCAAACCA 603
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 533 GCCTGGACATGAATACTTCTCTTACTTGGGCCAGAAAACTCAGATGGAAGCAGCAAACCA 592
Query 604 AGCCAAGATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAAAGGA- 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 593 AGCCAAGATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAACGGAA 652
Query 663 CTGGACTCACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCTACTC 722
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 653 C-GGACTCACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCCACTC 711
Query 723 AAAGGCTAGGAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTC 782
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGAGGCTAGGAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTC 771
Query 783 AGAATGAGAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTTGCGATTCAAAAGGCTG 842
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 772 AGAATGAGAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTGGCGATTCAAAAGGCTG 831
Query 843 CTTTGTCCCAAAACTCTCGTGTGGCTGAGGTTGAAGCAGCCAAGGCTGTTGCTTTGAGGG 902
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 832 CTTTGTCCCAAAACTCTCGTGTGGCTGAGGTTGAAGCATCCAAGGCTGTTGCTTTGAGGG 891
Query 903 AAGCTGAGCTTCAGACTAAAGTAGAGAAGATGAATGCATTGACTCGGACAGAGAAGCTTA 962
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 892 AAGCTGAGCTTCAGACTAAAGTCGAGAAAATGAATGCATTGACTCGGACAGAGAAGCTTA 951
Query 963 AAGCTGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCGAACT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 952 AAGCTGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCTAACT 1011
Query 1023 GGGAGTTGTACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAG 1082
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGGAGTTATACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAG 1071
Query 1083 CGGAAGCGACGAAAGCTGCAGCTGATGCTGCCTTCTATTCAAAACAGAAAGATGCAGAGG 1142
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1072 CGGAGGCGATGAAAGCAGCAGCTGATGCTGCCTTCTATTCTAAACAGAAAGATGCAGAGG 1131
Query 1143 GACTTGTCGCAATGGCCGATGCTCAGGGGACTTACCTCAAGACCCTCTTAGGCGCAGTTA 1202
| ||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1132 GGCTTGTGGCAATGGCCGAAGCTCAGGGGAAATATCTCAAGACCCTCTTAGGCGCAGTTA 1191
Query 1203 ACAATGATTACTCAGCCATGAGAGACTTCTTGATGATCAACAATGGCATTTATCAGGATA 1262
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1192 ACAATGATTACTCATCCATGAGGGACTTCTTGATGATCAACAATGGCATTTATCAAGAAA 1251
Query 1263 TTGCCAAGACCAATGCTGTTGCGATCAGGGACCTGCAGCCTAAGATCAGCGTGTGGAACC 1322
| ||||| ||||||||| | || |||| ||||||||||||||||||||| ||||||||||
Sbjct 1252 TCGCCAAAACCAATGCTCTGGCTATCAAGGACCTGCAGCCTAAGATCAGTGTGTGGAACC 1311
Query 1323 ATGGTGGTGCTGAGCAGGGGATGAACGGTGGTGGTAAAGCTACGATGAACGATATTGCTG 1382
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1312 ATGGTGGTGCCGAGCAGGGGATGAACGGTGGTGGTAAAGGTCCGATGAACGATATTGCTG 1371
Query 1383 GACTCTACAAGATGTTACCACCGGTTCTTGATACGGTTTATGAGCAGACAGGGATGCAGC 1442
|||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1372 GACTATACAAGATGTTGCCACCGGTTCTTGACACGGTTTATGAGCAGACCGGGATGCAGC 1431
Query 1443 CACCAGCTTGGATTGGTACATTGCGTGGTGCTGAGCCCAAACAATCACTTCATGCTCAAC 1502
|||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1432 CACCAGCTTGGATTGGTACACTACGTGGTGCTGAGCCCAAACAATCACTTCAGGCTCAAC 1491
Query 1503 AACACAGAGGTTGAGATCTCAAATGTTG 1530
|||||||||||||||||||||| |||||
Sbjct 1492 AACACAGAGGTTGAGATCTCAAGTGTTG 1519
> Ahg922446 jgi|Araly1|922446|scaffold_103727.1
Length=1483
Score = 1842 bits (997), Expect = 0.0
Identities = 1312/1464 (90%), Gaps = 21/1464 (1%)
Strand=Plus/Plus
Query 73 AAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGGTGGTGGGAT 132
||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||||
Sbjct 17 AAGAATGAGTTACAGAGTCGCTAAACCTTCGGAGTATCTGGCGATCACCGGTGGTGGGAT 76
Query 133 CACAGACATCAAGCTTGCAAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTGCACCGTCTT 192
|| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 77 CAAAGATATCAAGCTTGCGAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTGCACTGTCTT 136
Query 193 CGACGTTTCTCCGGTGAACTACACGTTCGAGGTTCAA-GCTATGAGTTCCGAGAAACTTC 251
|||||||||||||||||||| |||||||| ||| || |||||||||||||||||||| |
Sbjct 137 TGACGTTTCTCCGGTGAACTATACGTTCGATGTT-AAGGCTATGAGTTCCGAGAAACTCC 195
Query 252 CCTTTGTTATTCCTGCTGTTTTCACAATCGGTCCTCGCGTTGATGATCCTCACGCTCTCT 311
|||||||||| || ||||||||||||||||| || || |||||||| ||||||||||| |
Sbjct 196 CCTTTGTTATCCCGGCTGTTTTCACAATCGGCCCGCGTGTTGATGACCCTCACGCTCTGT 255
Query 312 TGTTGTATGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAATGAGCTTG 371
| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 256 TATTGTACGCTATGCTTATGTCTCAACACGACAAGCACTCGAATCACGTCAATGAGCTTG 315
Query 372 TTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTTCCATGACTATGGAAGAGG 431
|||| ||||||||||||||||||||||||||||| | ||| |||||||| |||||||| |
Sbjct 316 TTCAAGGTGTTATCGAAGGAGAGACTCGTGTTCTCGCTGCCTCCATGACCATGGAAGAAG 375
Query 432 TCTTCAAAGGAACAAAGGAGTTTAAGAAGGAAGTGTTTGACAAGGTTCAGCTAGAGCTAA 491
|||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||
Sbjct 376 TCTTCAAAGGAACAAAGGAGTTCAAGAAAGAAGTGTTTGATAAGGTTCAACTAGAACTAA 435
Query 492 ACCAGTTTGGTCTTGTGATCTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAC 551
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 436 ACCAGTTTGGTCTTGTAATTTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAT 495
Query 552 ATGAGTACTTCTCTTACTTGGGCCAGAAG-ACTCAGATGGAAGCAGCAAACCAAGCCAAG 610
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 496 ATGAGTACTTCTCTTACTTGGGCCAG-AGAACTCAGATGGAAGCAGCAAACCAAGCCAAG 554
Query 611 ATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAAAGGACTGGACTC 670
|||||||||||||||||| |||||||||||||| | |||||||||||| |||| || |||
Sbjct 555 ATCGATGTAGCAGAGGCACAGATGAAGGGAGAGATAGGTGCCAAAGAACGGACCGGGCTC 614
Query 671 ACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCTACTCAAAGGCTA 730
||| ||||||||||||| || ||||||||||| ||||||||||| || ||||| || |||
Sbjct 615 ACAGTCCAGAATGCAGCAAATATTGACGCTGACTCAAAGATCATATCCACTCAGAGACTA 674
Query 731 GGAG-AAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTCAGAATGA 789
|| | |||||||||| |||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 675 GG-GCAAGGGACAAAGGAGGAGATTAAGGTGAAGACTGAGGTCAAAGTGTTTGAGAATGA 733
Query 790 GAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTTG-CGATTCA-AAAGGCTGCTTTG 847
||| |||| |||||| ||| ||||||| |||||| ||| ||||||| |||| |||| |||
Sbjct 734 GAAGGAGGGTCTTGTAGCTGAGGCTGACGCAGCA-TTGGCGATTCAGAAAG-CTGCGTTG 791
Query 848 TCCCAA-AACTCTCGTGTGGCTGAGGTTGAAGCAGCCAAGGCTGTTGCTTTGAGGGAAGC 906
|| || || |||| | ||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 792 TCG-AAGAATTCTCTTCTGGCTGAGGTTGAAGCAGCCAAGGCAGTTGCTTTAAGGGAAGC 850
Query 907 TGAGCTTCAGACTAAAGTAGAGAAGATGAATGCATTGACTCGGACAGAGAAGCTTAAAGC 966
|||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 851 TGAGCTTCAGACTAAAGTCGAGAAAATGAATGCATTGACTCAGACAGAGAAGCTTAAGGC 910
Query 967 TGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCGAACTGGGA 1026
|||||| | |||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 911 CGAGTTCTTAAGTAAAGCTAGTGTTGAGTATGAAACTAAGGTACAAGAAGCAAACTGGGA 970
Query 1027 GTTGTACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAGCGGA 1086
| | |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 971 GCTATACAATAAGCAAAAGCAAGCGGAAGCAGTTCTTTACGAGAAGGAGAAGCAAGCGGA 1030
Query 1087 AGCGACGAAAGCTGCAGCTGATGCTGCCTTCTATTCAAAACAGAAAGATGCAGAGGGACT 1146
|| | ||||||||| ||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 1031 GGCAATGAAAGCTGCGGCTGATGCTATTTTCTATTCGAAACAGAGAGATGCAGAGGGACT 1090
Query 1147 TGTCGCAATGGCCGATGCTC-AGGGGACTTACCTCAAGACCCTCTTAGGCGCAGTTAACA 1205
|||||| |||||| |||||| |||| ||||| || | ||||||||||| ||||||| |||
Sbjct 1091 TGTCGCTATGGCCAATGCTCTAGGG-ACTTATCTTAGGACCCTCTTAGACGCAGTTGACA 1149
Query 1206 ATGATTACTCAGCCATGAGAGACTTCTTGATGATCAACAATGGCATTTATCAGGATATTG 1265
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1150 ATGATTACACAGCTATGAGAGACTTCTTGATGATCAACAATGGTGTTTATCAGGATATTG 1209
Query 1266 CCAAGACCAATGCTGTTGCGATCAGGGACCTGCAGCCTAAGATCAGCGTGTGGAACCATG 1325
|||||| ||| || ||||| ||||| ||| |||||||||| ||||| || ||||||||||
Sbjct 1210 CCAAGAACAACGCGGTTGCAATCAGAGACTTGCAGCCTAAAATCAGTGTTTGGAACCATG 1269
Query 1326 GTGGTGCTGAGCAGGGGATGAACGGTGGTGGTAAAGCTAC-G--ATGAACGATATTGCTG 1382
|||||||| | ||||||||||| ||||||||||| | || | ||||| ||||||||||
Sbjct 1270 GTGGTGCTAATCAGGGGATGAATGGTGGTGGTAATGGTAATGCTATGAATGATATTGCTG 1329
Query 1383 GACTCTACAAGATGTTACCACCGGTTCTTGATACGGTTTATGAGCAGACAGGGATGCAGC 1442
|||| ||||||||||| |||||| ||||||| ||||||||| | ||||| || |||||||
Sbjct 1330 GACTGTACAAGATGTTGCCACCGATTCTTGAAACGGTTTATCATCAGACCGGAATGCAGC 1389
Query 1443 CACCAGCTTGGATTGGTACATT-GCGTGGTGCTGAGCCCAAACAATCACTTCATG-CTCA 1500
|||| ||||||||||||||| | | |||||||||| |||||||||||||||| || |||
Sbjct 1390 CACCGGCTTGGATTGGTACACTAG-GTGGTGCTGAACCCAAACAATCACTTC-TGGCTCT 1447
Query 1501 ACAACACAGAGGTTGAGATCTCAA 1524
|||||| |||||||||||||||||
Sbjct 1448 ACAACAAAGAGGTTGAGATCTCAA 1471
> Ahg489376 jgi|Araly1|489376|fgenesh2_kg.6__2510__AT5G25250.1
Length=1582
Score = 1173 bits (635), Expect = 0.0
Identities = 1155/1402 (82%), Gaps = 52/1402 (4%)
Strand=Plus/Plus
Query 81 GTTACAGAGTCGCTAA-AGCATCGCAGTATCTT-GCGATCACCGGTGGTGGGATC-ACAG 137
||| || ||| || || ||| || |||||| || ||||||||||||| ||| ||| | ||
Sbjct 60 GTT-CAAAGTTGC-AAGAGCGTCACAGTAT-TTGGCGATCACCGGTGCTGGTATCGA-AG 115
Query 138 ACATCAAGCTTGCAAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTGCACCGTCTTCGACG 197
|||| |||||| |||||||||| ||||||||||||||||| ||||||||| ||||||| |
Sbjct 116 ACATAAAGCTTTCAAAGAAGTCATGGGTGTTTCCATGGCAATCTTGCACCATCTTCGATG 175
Query 198 TTTCTCCGGTGAACTACACGTTCGAGGTTCAAGCTATGAGTTCCGAGAAACTTCCCTTTG 257
||||||||||||||||||| ||| | || ||||| |||||| | ||||| ||||| ||||
Sbjct 176 TTTCTCCGGTGAACTACACTTTCAAAGTCCAAGCCATGAGTGCAGAGAAGCTTCCTTTTG 235
Query 258 TTATTCCTGCTGTTTTCACAATCGGTCCTCGCGTTGATGATC-CTCACGCTCT-CTTGTT 315
|| | ||||||||||| || || |||||||| || ||||| | | | || || || |
Sbjct 236 TTCTCCCTGCTGTTTTTACGATTGGTCCTCGTGTCGATGA-CGATGAAGCGCTGATT-CT 293
Query 316 GTATGCCATGCTT-ATGTCTCAACACGAT-AAGCACTCGAATCACG-TCAATGAGCTTGT 372
||| || | | || || |||| || ||| ||| | || ||||| | || ||||||||||
Sbjct 294 GTACGCTA-GGTTGATTTCTCCTCATGATAAAG-AATCTAATCATGTTC-ATGAGCTTGT 350
Query 373 TCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTTCCATGACTATGGAAGAGGT 432
| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 351 TGAAGGTGTTATTGAAGGAGAGACTCGTGTTCTTGCTGCTTCCATGACTATGGAAGAGAT 410
Query 433 CTTCAAAGGAACAAAGGAGTTTAAGAAGGAAGTGTTTGACAAGGTTCAGCTAGAGCTAAA 492
||| ||||| ||||||||||||||||||||||||||||| ||||| || | || |||||
Sbjct 411 CTTTAAAGGGACAAAGGAGTTTAAGAAGGAAGTGTTTGATAAGGTACAATTGGAACTAAA 470
Query 493 CCAGTTTGGTCTT-GTGATCTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAC 551
||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 471 TCAGTTTGGT-TTAGTAATCTACAATGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGAC 529
Query 552 ATGAGTACTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCAGCAAACCAAGC-CAAG 610
|||| ||||||||||||||||| ||||| || || |||||||||||||| || || | |
Sbjct 530 ATGAATACTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCAGCAAATCAGGCGCG-G 588
Query 611 ATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAAAGGACTGGACTC 670
|||||||| | ||||| ||||||||||||||| | |||||||| ||| ||||||| ||
Sbjct 589 ATCGATGTTTCTGAGGCGAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGGTCTT 648
Query 671 ACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCTACT-CAAAGGCT 729
|| ||||||| ||||| |||||||| || || ||||||||||| || | | || ||||
Sbjct 649 ACCCTCCAGAACGCAGCGAAGATTGATGCGGAATCAAAGATCATATCGA-TGCAGAGGCA 707
Query 730 AGGAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTCAGAATGA 789
|||||||||||||||||| ||||| || ||||||||||| || ||||||||| ||||| |
Sbjct 708 AGGAGAAGGGACAAAAGAAGAGATTAAAGTGAAGACTGAGGTTAAAGTGTTTGAGAATCA 767
Query 790 GAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCA-CTTGCGATTCAAAAGGCTGCTTTGT 848
||| |||||| ||| |||||||| |||| | | || ||||| |||| || |||| |
Sbjct 768 GAAGGAGGCTGATGTAGCTAAGGCCAATGCCG-AGCTAGCGATGAAAAAAGCCGCTTGGA 826
Query 849 CCCAAA-ACT-CTC-GTGTGGCTGAGGTTGAAGCAGCCAAGGCTGTTGCTTTGAGGGAAG 905
| || | | ||| | |||||||||||||||||| |||| || || |||||||| ||||
Sbjct 827 CT-AAGGA-TGCTCAG-GTGGCTGAGGTTGAAGCAACCAAAGCAGTGGCTTTGAGAGAAG 883
Query 906 CTGAGCTTCAGACTAAAGTAGAGAAGATGAATGCATTGACTCGGACAGAGAAGCTTAAAG 965
|||||||||||||| |||| ||||| |||||||||||||| || || |||||||||||||
Sbjct 884 CTGAGCTTCAGACTCAAGTCGAGAAAATGAATGCATTGACCCGAACCGAGAAGCTTAAAG 943
Query 966 CTGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCGAACTGGG 1025
| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 944 CCGAGTTCCTTAGTAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAACTGGG 1003
Query 1026 AGTTGTACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAGCGG 1085
| | ||||| ||||| ||||||||||| || ||||| |||||||| || |||||||| |
Sbjct 1004 AACTATACAACAAGCAGAAGCAAGCAGAGGCGGTTCTATACGAGAAACAAAAGCAAGCCG 1063
Query 1086 AAGCGAC-GAAAGCTGCA-GCTGATGCTGCCTTCTATTCAAAACAGAAAGATGCAGAGGG 1143
| || || |||||| ||| || || || || ||||| ||||| |||||||| ||||||||
Sbjct 1064 AGGC-ACAGAAAGC-GCAAGCAGACGCAGCATTCTACTCAAAGCAGAAAGAAGCAGAGGG 1121
Query 1144 ACTTGTCGCAATGGCC-GATGCTCAGGGGACTTACCTCAAGA-CCCTCTTAGGCGCAGTT 1201
|||||| || | || | |||||| |||||||| || |||| ||||||||| ||| |||
Sbjct 1122 ACTTGTTGCCTTAGCTAG-TGCTCAAGGGACTTATCT-AAGAACCCTCTTAGACGCTGTT 1179
Query 1202 AACAATGATTACTCA-GCCATGAGAGACTTCTTGATGATCAACAATGGCATTTATCAGGA 1260
| ||||| || || | | | ||||||||||||||||| |||||||| |||||||| ||
Sbjct 1180 CAGAATGACTATTCTTGTCTT-AGAGACTTCTTGATGATTAACAATGGTATTTATCAAGA 1238
Query 1261 TATTGCCAAGACCAATGCTGTTG-CGATCAGGGACCTGCAGCCTAAGATCAGCGTGTGGA 1319
|| || ||||| ||||| | || || | || ||| ||||||||||||| || || ||||
Sbjct 1239 GATCGCGAAGACTAATGC-GATGGCGGTTAGAGACTTGCAGCCTAAGATTAGTGTTTGGA 1297
Query 1320 ACCATGGTGGTGCTGAGCAGGGGATGAACGGTGGTGGTAAAGCTACGATGAACGATATTG 1379
|||||||||| | | || || || ||| |||| || |||| |||| ||||| |
Sbjct 1298 ACCATGGTGGAGA--A-CAAGG--TGGT-GGTAGTGGGAATGCTA---TGAAGGATATAG 1348
Query 1380 CTGGACTCTACAAGATGTTACCACCGGTTCTTGATACGGTTTATGAGCAGACAGGGATGC 1439
||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1349 CTGGACTTTACAAGATGTTGCCTCCGGTTCTTGATACGGTTTATGAGCAGACTGGGATGA 1408
Query 1440 AGCCACCAGCTTGGATTGGTAC 1461
||||||| |||||||| |||||
Sbjct 1409 AGCCACCGGCTTGGATCGGTAC 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5