BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64880.1 Length=861 Score E Sequences producing significant alignments: (Bits) Value Ahg496708 jgi|Araly1|496708|fgenesh2_kg.8__2524__AT5G64880.1 1031 0.0 > Ahg496708 jgi|Araly1|496708|fgenesh2_kg.8__2524__AT5G64880.1 Length=791 Score = 1031 bits (558), Expect = 0.0 Identities = 683/741 (92%), Gaps = 18/741 (2%) Strand=Plus/Plus Query 59 AAAAAATGGTGGATTCTGGGAAAGAGTTTTTGGTTTTAGATAGCTACAATAATATCCCAT 118 |||||||||| ||||| ||||||||||||||| | |||||||||||||||| |||||||| Sbjct 41 AAAAAATGGTAGATTCCGGGAAAGAGTTTTTGATGTTAGATAGCTACAATAGTATCCCAT 100 Query 119 GGCTAATTTGGATCCAAATGTTGGTCTTCGTCCTCCTCTTACTCCTTCTTTGCGTCATCG 178 || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| Sbjct 101 GGTTAATTTGGATCCAAATGTTCGTCTTCGTCCTCCTCTTACTCCTCCTTTGCGTCGTCG 160 Query 179 GAATATTCTCCTTTGATATCGTAGATAACAGCTACTCGTCTTCTGATTCTGTTCCTTCTA 238 | || |||||||| ||||||| |||||||| | ||| |||||||||||||||||||||| Sbjct 161 GGATCTTCTCCTTAGATATCGGAGATAACAATTGCTCATCTTCTGATTCTGTTCCTTCTA 220 Query 239 CCTCTGGTTCATCTCTCTCTAAGCGATTTCTTTCTGGAAATCCGATTCCGATCAGTCACC 298 |||| || |||||||| ||||| |||||||||||||||| ||||||||||||||| |||| Sbjct 221 CCTCCGGCTCATCTCTTTCTAAACGATTTCTTTCTGGAACTCCGATTCCGATCAGCCACC 280 Query 299 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCATCAGGTTGGAAGCTCTC 358 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 281 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCACCAGATTGGAAGCTCTC 340 Query 359 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTCACAACAGTAACAGAGG 418 ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 341 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTGACAA--G-AACAGAGG 397 Query 419 AAGGAGAAGGTTCGTTGGAGAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 478 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 398 AAGCAGAAGGTTCGTTGGACAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 457 Query 479 TTAGGCTGGCTGGATCTGCATTTCTTAAGTGTTTCGGGATTGACCGGAGTACTGAAGAA- 537 |||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 458 TTAGGCTGGCAGGATCTGCATTTCTAAAGTGTTTCGGGATTGACCGGAGTACCGAAGAAG 517 Query 538 A--CCGAGGATTCTTTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTT-GTGA 594 | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 518 ATACCGAGGATTCATTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTTTGTGA 577 Query 595 ATAGA-GAAGAGAGAACATTACTA-A-CACGTTTTTATTATGTGTTTATCGTAGCTATCG 651 ||||| ||||||||||||| |||| | ||||||||||||||||||| |||||||| |||| Sbjct 578 ATAGAAGAAGAGAGAACAT-ACTATAACACGTTTTTATTATGTGTTGATCGTAGCAATCG 636 Query 652 AGTAGGAAGAGATTGAAGAAACTTGTAA-GTA-TAG-A-TGAAAA-GGTGAAATTGTTGG 706 ||||||||||||||||||||| |||||| ||| || | |||||| |||||||||||||| Sbjct 637 AGTAGGAAGAGATTGAAGAAATTTGTAAAGTAGTACTAATGAAAAAGGTGAAATTGTTGG 696 Query 707 TGTAACACGAACGAGTTGACTCAACGCATTCGCttttttctttttGCGTGAAAACGATAT 766 ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| Sbjct 697 GGTAACACGAACGAGTTGACTCAACGCATTCG-TTTTTTCTTTTTACGTGAAATCGATAT 755 Query 767 TGTCACTGTGGTTAAAT-TAT 786 ||||||| ||||||||| ||| Sbjct 756 TGTCACTATGGTTAAATATAT 776 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31870758612 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5