BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64880.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496708 jgi|Araly1|496708|fgenesh2_kg.8__2524__AT5G64880.1 1031 0.0
> Ahg496708 jgi|Araly1|496708|fgenesh2_kg.8__2524__AT5G64880.1
Length=791
Score = 1031 bits (558), Expect = 0.0
Identities = 683/741 (92%), Gaps = 18/741 (2%)
Strand=Plus/Plus
Query 59 AAAAAATGGTGGATTCTGGGAAAGAGTTTTTGGTTTTAGATAGCTACAATAATATCCCAT 118
|||||||||| ||||| ||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 41 AAAAAATGGTAGATTCCGGGAAAGAGTTTTTGATGTTAGATAGCTACAATAGTATCCCAT 100
Query 119 GGCTAATTTGGATCCAAATGTTGGTCTTCGTCCTCCTCTTACTCCTTCTTTGCGTCATCG 178
|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 101 GGTTAATTTGGATCCAAATGTTCGTCTTCGTCCTCCTCTTACTCCTCCTTTGCGTCGTCG 160
Query 179 GAATATTCTCCTTTGATATCGTAGATAACAGCTACTCGTCTTCTGATTCTGTTCCTTCTA 238
| || |||||||| ||||||| |||||||| | ||| ||||||||||||||||||||||
Sbjct 161 GGATCTTCTCCTTAGATATCGGAGATAACAATTGCTCATCTTCTGATTCTGTTCCTTCTA 220
Query 239 CCTCTGGTTCATCTCTCTCTAAGCGATTTCTTTCTGGAAATCCGATTCCGATCAGTCACC 298
|||| || |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 221 CCTCCGGCTCATCTCTTTCTAAACGATTTCTTTCTGGAACTCCGATTCCGATCAGCCACC 280
Query 299 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCATCAGGTTGGAAGCTCTC 358
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 281 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCACCAGATTGGAAGCTCTC 340
Query 359 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTCACAACAGTAACAGAGG 418
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 341 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTGACAA--G-AACAGAGG 397
Query 419 AAGGAGAAGGTTCGTTGGAGAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 478
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AAGCAGAAGGTTCGTTGGACAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 457
Query 479 TTAGGCTGGCTGGATCTGCATTTCTTAAGTGTTTCGGGATTGACCGGAGTACTGAAGAA- 537
|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 458 TTAGGCTGGCAGGATCTGCATTTCTAAAGTGTTTCGGGATTGACCGGAGTACCGAAGAAG 517
Query 538 A--CCGAGGATTCTTTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTT-GTGA 594
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 518 ATACCGAGGATTCATTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTTTGTGA 577
Query 595 ATAGA-GAAGAGAGAACATTACTA-A-CACGTTTTTATTATGTGTTTATCGTAGCTATCG 651
||||| ||||||||||||| |||| | ||||||||||||||||||| |||||||| ||||
Sbjct 578 ATAGAAGAAGAGAGAACAT-ACTATAACACGTTTTTATTATGTGTTGATCGTAGCAATCG 636
Query 652 AGTAGGAAGAGATTGAAGAAACTTGTAA-GTA-TAG-A-TGAAAA-GGTGAAATTGTTGG 706
||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||||||
Sbjct 637 AGTAGGAAGAGATTGAAGAAATTTGTAAAGTAGTACTAATGAAAAAGGTGAAATTGTTGG 696
Query 707 TGTAACACGAACGAGTTGACTCAACGCATTCGCttttttctttttGCGTGAAAACGATAT 766
||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 697 GGTAACACGAACGAGTTGACTCAACGCATTCG-TTTTTTCTTTTTACGTGAAATCGATAT 755
Query 767 TGTCACTGTGGTTAAAT-TAT 786
||||||| ||||||||| |||
Sbjct 756 TGTCACTATGGTTAAATATAT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5