BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64890.1

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918286 jgi|Araly1|918286|Al_scaffold_0008_3037                    357    5e-98


> Ahg918286 jgi|Araly1|918286|Al_scaffold_0008_3037
Length=333

 Score =  357 bits (193),  Expect = 5e-98
 Identities = 291/337 (86%), Gaps = 11/337 (3%)
 Strand=Plus/Plus

Query  79   ATGGAGAAATTAGATAAACGGAGGGAAGAAGAAACTTATCTATGGATTCCAGTTCAGTTT  138
            ||||||||||| |||| ||| |  |||||||||||||||||||| |||||| ||||  ||
Sbjct  1    ATGGAGAAATTCGATAGACGAATCGAAGAAGAAACTTATCTATGTATTCCATTTCAAATT  60

Query  139  CTCGACCAAGCTCTCATAGCTGTCTTGAAATGTATTGGTCTTCTTTGTCAGCCAGCGAAG  198
            ||||||||| ||||||||||||||||||||||| ||||||||||||| | | | ||||||
Sbjct  61   CTCGACCAAACTCTCATAGCTGTCTTGAAATGTCTTGGTCTTCTTTGCCCGACGGCGAAG  120

Query  199  AAAACTGCGCCGTCTCCGGTAACTT-TTAACCAGCCGGAGGAACAAGAGGAAGACTATGG  257
            ||||| ||| || | || |  | || |||||| ||| || ||||||||||||||| ||||
Sbjct  121  AAAACGGCGTCGCCGCCTGCGA-TTCTTAACCCGCCAGATGAACAAGAGGAAGACGATGG  179

Query  258  TGTTGCTC-TGAAAGACGATGATGTCGTTGTGTTG-CT--TAG-GGACAACAAGGCCAAA  312
            |||||| | |||||||||||||||||||| ||||| |   ||| || ||| |||||||||
Sbjct  180  TGTTGC-CATGAAAGACGATGATGTCGTTTTGTTGTCGACTAGAGG-CAAGAAGGCCAAA  237

Query  313  TCAAAGAAAAGGGATAAAGAAAAGCCTAGTTCAGGTCGTCCTGGCCAAACTAATAGTG-T  371
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |
Sbjct  238  GCAAAGAAAAGGGATAAAGAAAATCCTAGTTCAGGTCGTCCTGGCCAAACTAATA-TAAT  296

Query  372  ACCCAACGCGGCAATACAAGTTTATAAGGAGGATTAA  408
            ||||||||| ||||||||||||||| |||||| ||||
Sbjct  297  ACCCAACGCAGCAATACAAGTTTATGAGGAGGGTTAA  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21367129840


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5