BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64890.1 Length=584 Score E Sequences producing significant alignments: (Bits) Value Ahg918286 jgi|Araly1|918286|Al_scaffold_0008_3037 357 5e-98 > Ahg918286 jgi|Araly1|918286|Al_scaffold_0008_3037 Length=333 Score = 357 bits (193), Expect = 5e-98 Identities = 291/337 (86%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 79 ATGGAGAAATTAGATAAACGGAGGGAAGAAGAAACTTATCTATGGATTCCAGTTCAGTTT 138 ||||||||||| |||| ||| | |||||||||||||||||||| |||||| |||| || Sbjct 1 ATGGAGAAATTCGATAGACGAATCGAAGAAGAAACTTATCTATGTATTCCATTTCAAATT 60 Query 139 CTCGACCAAGCTCTCATAGCTGTCTTGAAATGTATTGGTCTTCTTTGTCAGCCAGCGAAG 198 ||||||||| ||||||||||||||||||||||| ||||||||||||| | | | |||||| Sbjct 61 CTCGACCAAACTCTCATAGCTGTCTTGAAATGTCTTGGTCTTCTTTGCCCGACGGCGAAG 120 Query 199 AAAACTGCGCCGTCTCCGGTAACTT-TTAACCAGCCGGAGGAACAAGAGGAAGACTATGG 257 ||||| ||| || | || | | || |||||| ||| || ||||||||||||||| |||| Sbjct 121 AAAACGGCGTCGCCGCCTGCGA-TTCTTAACCCGCCAGATGAACAAGAGGAAGACGATGG 179 Query 258 TGTTGCTC-TGAAAGACGATGATGTCGTTGTGTTG-CT--TAG-GGACAACAAGGCCAAA 312 |||||| | |||||||||||||||||||| ||||| | ||| || ||| ||||||||| Sbjct 180 TGTTGC-CATGAAAGACGATGATGTCGTTTTGTTGTCGACTAGAGG-CAAGAAGGCCAAA 237 Query 313 TCAAAGAAAAGGGATAAAGAAAAGCCTAGTTCAGGTCGTCCTGGCCAAACTAATAGTG-T 371 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | Sbjct 238 GCAAAGAAAAGGGATAAAGAAAATCCTAGTTCAGGTCGTCCTGGCCAAACTAATA-TAAT 296 Query 372 ACCCAACGCGGCAATACAAGTTTATAAGGAGGATTAA 408 ||||||||| ||||||||||||||| |||||| |||| Sbjct 297 ACCCAACGCAGCAATACAAGTTTATGAGGAGGGTTAA 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21367129840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5