BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64900.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951329 jgi|Araly1|951329|scaffold_803216.1                        202    2e-51


> Ahg951329 jgi|Araly1|951329|scaffold_803216.1
Length=233

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 150/169 (89%), Gaps = 5/169 (3%)
 Strand=Plus/Plus

Query  69   TCTTATCAGATCTCAATGGAGAAATCAGATAGACGAAGC---GAAGAAAGTCACCTATGG  125
            ||| |||||||||||||||| |||| ||  |||||||||   ||||||||| | ||||| 
Sbjct  6    TCTCATCAGATCTCAATGGACAAATTAGGCAGACGAAGCGAAGAAGAAAGTTATCTATGT  65

Query  126  ATTCCTCTTCAGTGCCTCGACCAAACCCTCAGAGCTATCTTGAAATGCCTTGGTCTTTTT  185
            |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct  66   ATTCCTCTTCAGTGTCTCGACCAAACTCTCAAAGCTATCTTGAAATGCCTTGGTCTTTTT  125

Query  186  CATCAAGATTCTCCGACAACGTCCTCTCCCGGAACTTCGAAAC-AGCCG  233
            ||||||||||||||||||||||| ||||| |||| ||| |||| |||||
Sbjct  126  CATCAAGATTCTCCGACAACGTCGTCTCCGGGAATTTC-AAACCAGCCG  173



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5