BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64905.1 Length=486 Score E Sequences producing significant alignments: (Bits) Value Ahg951330 jgi|Araly1|951330|scaffold_803217.1 407 4e-113 > Ahg951330 jgi|Araly1|951330|scaffold_803217.1 Length=332 Score = 407 bits (220), Expect = 4e-113 Identities = 293/326 (90%), Gaps = 14/326 (4%) Strand=Plus/Plus Query 40 aaaaaGATTAAGAAGTCAACGATGGAGAATCTCAGAAATGGAGAAGATAACGGTTCT--- 96 |||| ||||||||| ||||| ||||||||||| |||||||| |||| ||||||||| Sbjct 1 AAAAGGATTAAGAAATCAACAATGGAGAATCTGAGAAATGGCCAAGAAAACGGTTCTCAC 60 Query 97 TTGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTCC 156 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 TGGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTTC 120 Query 157 GGTCTCGAAAG-T-T-CATCATCATCATCTTCTTCTTGCGATCTTTCGTCATCACACAGC 213 |||||||| || | | | |||||||||||||||||| ||||| |||||||||| |||||| Sbjct 121 GGTCTCGATAGCTCTTCTTCATCATCATCTTCTTCTGGCGATTTTTCGTCATCTCACAGC 180 Query 214 GAGGAAGATGAGAGTATCGATATAAAGGAGGAGgaagaagaagaagaagaagaTGGCATG 273 ||||||||||||||||||||||||||||||||||| | || | |||||||||| ||| Sbjct 181 GAGGAAGATGAGAGTATCGATATAAAGGAGGAGGA-G--GA-G--GAAGAAGATGAAATG 234 Query 274 ACCATTGAAATCAAAGCGAGAGGGAAGAACAAGACTAAGCCT-ACGCCAAGTTCAGGAAA 332 |||||||||||||||||| ||||||||| |||| |||||||| | ||||||||||||||| Sbjct 235 ACCATTGAAATCAAAGCGCGAGGGAAGACCAAGCCTAAGCCTCA-GCCAAGTTCAGGAAA 293 Query 333 AGGAGGCAAACACAATTAGAGTTCAT 358 |||||||||||||||||||||||||| Sbjct 294 AGGAGGCAAACACAATTAGAGTTCAT 319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17627882118 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5