BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64905.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951330 jgi|Araly1|951330|scaffold_803217.1                        407    4e-113


> Ahg951330 jgi|Araly1|951330|scaffold_803217.1
Length=332

 Score =  407 bits (220),  Expect = 4e-113
 Identities = 293/326 (90%), Gaps = 14/326 (4%)
 Strand=Plus/Plus

Query  40   aaaaaGATTAAGAAGTCAACGATGGAGAATCTCAGAAATGGAGAAGATAACGGTTCT---  96
            |||| ||||||||| ||||| ||||||||||| ||||||||  |||| |||||||||   
Sbjct  1    AAAAGGATTAAGAAATCAACAATGGAGAATCTGAGAAATGGCCAAGAAAACGGTTCTCAC  60

Query  97   TTGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTCC  156
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   TGGATCCCATTTACGTTCTTTGATCAATCTTCAGTGACGATTCCTCTCTTGAAGTGTTTC  120

Query  157  GGTCTCGAAAG-T-T-CATCATCATCATCTTCTTCTTGCGATCTTTCGTCATCACACAGC  213
            |||||||| || | | | |||||||||||||||||| ||||| |||||||||| ||||||
Sbjct  121  GGTCTCGATAGCTCTTCTTCATCATCATCTTCTTCTGGCGATTTTTCGTCATCTCACAGC  180

Query  214  GAGGAAGATGAGAGTATCGATATAAAGGAGGAGgaagaagaagaagaagaagaTGGCATG  273
            ||||||||||||||||||||||||||||||||||| |  || |  ||||||||||  |||
Sbjct  181  GAGGAAGATGAGAGTATCGATATAAAGGAGGAGGA-G--GA-G--GAAGAAGATGAAATG  234

Query  274  ACCATTGAAATCAAAGCGAGAGGGAAGAACAAGACTAAGCCT-ACGCCAAGTTCAGGAAA  332
            |||||||||||||||||| ||||||||| |||| |||||||| | |||||||||||||||
Sbjct  235  ACCATTGAAATCAAAGCGCGAGGGAAGACCAAGCCTAAGCCTCA-GCCAAGTTCAGGAAA  293

Query  333  AGGAGGCAAACACAATTAGAGTTCAT  358
            ||||||||||||||||||||||||||
Sbjct  294  AGGAGGCAAACACAATTAGAGTTCAT  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5