BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64910.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040 1637 0.0
Ahg487826 jgi|Araly1|487826|fgenesh2_kg.6__960__AT5G10010.1 453 2e-126
Ahg906915 jgi|Araly1|906915|Al_scaffold_0003_4043 86.1 7e-16
> Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040
Length=1386
Score = 1637 bits (886), Expect = 0.0
Identities = 1063/1148 (93%), Gaps = 14/1148 (1%)
Strand=Plus/Plus
Query 383 ggagga-gga-a-aaagaagaagcggcgagagaaga-ca--aagaggaggaagaagaagc 436
|||||| ||| | |||||||||| ||||| |||||| || ||||||| ||||||||||
Sbjct 243 GGAGGAGGGAGAGAAAGAAGAAGAGGCGAAAGAAGACCAGGAAGAGGAAAAAGAAGAAGC 302
Query 437 ggtgaagCCTGATGAGAGTGCGAGCCAAAAGGAGGAGGCGAAAGGTGCGTCGTCTTCAGA 496
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 303 GGCGAAACCTGATGAGAGTGCGAGCCAAAAGGAGGAGGCGAAAGGTGCGTCGTCTTCTCA 362
Query 497 ACCGCAGCTTCGTCGTGGTAAGCGTAAGAGAGGCACAAAGACGGAAGCGGAGAAGAAAGT 556
||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 363 GCCGAAGCTTCGTCGTGGTAAGCGTAAGAGAGTCACAAAGACGGAAGCGGAGAAG-AA-- 419
Query 557 ATCGACTCCTAGAGCCAAGAAGCGAGCCAAAACGACCAAGGCGCAAGCATCTGAGCCTGA 616
| ||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 420 ACCGACTCCGAGAGCCAAGAAGCGAGCTAAAACGACCAAGGCGCAAACAGCTGAGCCTGA 479
Query 617 GTACTTCGAAGAGAAGCGTAATCTGGAGGATTTGTGGAAGGCTACATTTTCAGTGGGAAC 676
|||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 480 GTACTTCGAAGAAAAGCGTAATCTGGAGGATTTGTGGAAGGATACATTTCCAGTGGGAAC 539
Query 677 GGAGTGGGACCAACAGGATGCACTTAATGAATTCAACTGGGATTTTACAAATCTTGAAGA 736
|||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||
Sbjct 540 GGAGTGGGACCAACAGGATGCAGTTTATGATTTCAACTGGGATTTTAAAAATCTTGAAGA 599
Query 737 AGCTCTGGAGGAAGGTGGAGAGCTCTATGGGAAGCAAGTCTATGTTTTTGGCTGCACTGA 796
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 600 AGCTCTGGAGGAAGGTGGAAAGCTCTATGGGAAGAAAGTCTATGTTTTTGGCTGCACTGA 659
Query 797 GTCTCATTCAGTCACTTACAAAGATGA-AAACAAGGATGTCCTTGTTCCTGTTGTCGTTT 855
|||||||||||||| ||||||| |||| ||| ||||||||| ||||||||| ||||||||
Sbjct 660 GTCTCATTCAGTCAATTACAAAAATGAGAAA-AAGGATGTCATTGTTCCTGCTGTCGTTT 718
Query 856 GTATTGATTCACCTATTCCCCCTTCTGATGAGATAGGAGTTGCATCGGTTCAAGGAGAGG 915
||||||| ||| |||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 719 GTATTGAGTCATCTATTCCCCCGTCTGATAAGATAGGAGTTGCATCAGTTCAAGGAGAGG 778
Query 916 TTGGGGAAATTATTGCAATGAAAACTATGAAAATGGCTTGGGTTCCTTACATCCCACTTG 975
|||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 779 TTGGGGAAATTATTCCAATGAAAAATATGAAAATGGATTGGGTTCCTTACGTCCCACTTG 838
Query 976 AACAAAGGGATAGACAAGTTGATA-ATAAGAACTTTCCAATTTTCATCTTGGGCTGTACT 1034
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 839 AACAAAGGGATAGACAAGTTGATAGA-AAGAACTTTCCAGTTTTCATCTTGGGCTGTACT 897
Query 1035 CAGAGAAGGTCTGCTCTCAAACATTTGCCTGACGATCGTGTTAAAAAGTTCAACTATTGC 1094
|||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||
Sbjct 898 CAGAGAAGGTCTGCTCTCAAGCATTTGCCGGAGGATCGTGCTAAAAAATTCAACTATTGC 957
Query 1095 CTTCCTTACATCAACAACCCATATAAGGTTGATGACTCTGAGAAGAGCACTGTGGTTAAA 1154
||||||||||| |||||||||| |||||| ||||| |||||| |||||||||||||| ||
Sbjct 958 CTTCCTTACATTAACAACCCATTTAAGGTAGATGAATCTGAGCAGAGCACTGTGGTTCAA 1017
Query 1155 ATAATGTTCCCTTCTGAGCCACCAGTTGAATGTGAATATGACTGGGTGAAAAGCGTCATT 1214
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1018 ATAAGGTTCCCTTCTGAGCCACAAGTTGAATGTGAATATGACTGGGTGAAAAGCGACGTT 1077
Query 1215 GAGGAATTCACCGACAGTCTGATCAATGAGGAGGTATTACTCCCGGAACAAAAGGTTGCG 1274
||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 1078 GAGGATTTCACCGACAATCTGATCAAGGAGGAGGTATTACTACCGGAACAAAAGGATGCG 1137
Query 1275 TTCGAGGAGTTTGTCAAAGAGAAAAGTGACAAAGCTATGGCAGCTTATGACACGGCACAA 1334
|| |||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 1138 TTTGAGGAGTTTGTCAAAGAGCAAAGTAACATAGCTATGGCAGCTTATGACAGGGCACAA 1197
Query 1335 GAAGCCCTAGAGAAAGCAAAGGAAGGACTGAGCGAAGAAACaaaaaaaGCCTATCAAGAA 1394
||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1198 GAAGCCCGAGAGAAAGTAAAGGAAGGACTGAGCGAAGAAACAACAAAAGCTTATCAAGAA 1257
Query 1395 ATGAGGTTGTACAAGTTTTATCCATTGCCTTCACCAGACACACCCCACACTGCAGGAATT 1454
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1258 ATGAAGTTGTACAAGTTTTATCCATTGCCTTCACCAGACACACCCGACACTGCAGGAATT 1317
Query 1455 GAGAAGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTTCTCCTAAACCCAGGAAC 1514
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1318 GAGAAGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTACTCC-AAACCCAGGAAC 1376
Query 1515 CTTTTTGT 1522
||||||||
Sbjct 1377 CTTTTTGT 1384
Score = 438 bits (237), Expect = 5e-122
Identities = 275/293 (94%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 116 gagaggaggttcgcgaggaggCCGTAAAACTGGTGCGTCTTCGTCGGCGAGTAAGAACGA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 GAGAGGAGGTTCGCGAGGAGGCCGTAAAACTGGTGCGTCTTCGTCGGCGAGTAAGAACGA 77
Query 176 TGATGCGGTGGTAGAGGCCACGACGACGCAGGAGACACAGCCTACTCAGGAGACAGAGGA 235
|||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 78 TGATGCGGTGGTAGAG---ACTACGACGCAGGAGACTCAGCCTACTCAGGAGACCGAGGA 134
Query 236 AACGGAGGATAAGGTGGAATCTCCGGCGCCTGAGGAGGAGGGAAAAAACGAAGAAGAAGC 295
| | |||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 135 AGCAGAGGCTAAGGTGGAATCTCCGGCGCCTGAGGAGGAGGGGAAGAACGAAGAAGAGGC 194
Query 296 GAACGAGAATCAGGAAGAGGAAGCGGCGAAGGTTGAATCTAAGGCTGCggaggagggagg 355
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 195 GAACGAGAATCAGGAAGAGGAAGCGGCGAAGGTTGAATCTAAGCCTGCGGAGGAGGGAGA 254
Query 356 gaacgaagaagaggcgaaagaggacaaggaggaggaaaaagaagaagcggcga 408
||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 255 GAAAGAAGAAGAGGCGAAAGAAGACCAGGAAGAGGAAAAAGAAGAAGCGGCGA 307
> Ahg487826 jgi|Araly1|487826|fgenesh2_kg.6__960__AT5G10010.1
Length=1684
Score = 453 bits (245), Expect = 2e-126
Identities = 663/858 (77%), Gaps = 56/858 (7%)
Strand=Plus/Plus
Query 609 GAGCCTGAGTACTTCGAAGAGAAGCGTAATCTGGAGGATTTGTGGAAGGCTACATTTTCA 668
||||||| ||||| || ||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 606 GAGCCTGTCTACTTTGAGGAGAAGCGTAATCTGGAGGATTTGTGGAAGGTTGCATTTCCA 665
Query 669 GTGGGAACGGAGTGGGACCAAC-AGGATGCACTTAATGAATTCAACTGGGATTTTACAAA 727
|||||||| |||||||| || || |||||||| |||||||||| |||||||| ||||
Sbjct 666 GTGGGAACTGAGTGGGATCAGTTAG-ATGCACTTTATGAATTCAATTGGGATTTC-CAAA 723
Query 728 -TCTTGAAGAAGC-TCTGGAGGAAGGTGGAGAGCTCTATGGGAAGCAAG-TCTATGTTTT 784
|||||||||||| | |||||||||| ||| |||||||||||||| ||| | ||||||||
Sbjct 724 ATCTTGAAGAAGCAT-TGGAGGAAGGAGGAAAGCTCTATGGGAAG-AAGGTTTATGTTTT 781
Query 785 TGGCTGCACTGAGTCTCA-TTCAGT-CACTTACAAAGATGAAAACAAGGAT-GTCCTTGT 841
|||||| || || |||| || ||| | || |||||| || ||||||| || |||| |||
Sbjct 782 TGGCTGTACAGAACCTCAATT-AGTACCCT-ACAAAGGTGCAAACAAG-ATTGTCCATGT 838
Query 842 TCCTGTTGTCGTT-TGTATTGATTCACCTATTCCCCCTTCTGATGAGATAGGAGTTG-CA 899
|||| ||| ||| || ||||| || ||| |||| ||||||||| ||||||| | | ||
Sbjct 839 CCCTGCTGTTGTTGTG-ATTGAATCTCCTTTTCCGCCTTCTGATAAGATAGG-GATCACA 896
Query 900 TCGGTTCA-AGGAGAGGTTGG-GGAAATTATTGCAATGAA-AACTATGAAAATGGCTTGG 956
|| ||||| || ||| || || |||||| ||| ||||||| || |||||||||| ||||
Sbjct 897 TCTGTTCAGAG-AGAAGT-GGAGGAAATCATTCCAATGAAGAAG-ATGAAAATGGATTGG 953
Query 957 GTTCCTTACATCCC-ACTTGAACAAAGGGATAGACAAGTTGATAATAAGAACTTTCCAA- 1014
|||||||||| || | ||||| |||| ||||||||||| ||||| | ||||| ||||
Sbjct 954 CTTCCTTACATTCCGA-TTGAAAAAAGAGATAGACAAGTGGATAAGATGAACTC-CCAAA 1011
Query 1015 TTTTCATCTTGGGCTGTACTCAGAGAAGGTCTGCTCTCAAACATTTGCCTGACGATCGTG 1074
|||| | ||||| ||||||||||| || |||||||||| |||| || || ||||
Sbjct 1012 TTTTTACCTTGGTTTGTACTCAGAGGAGATCTGCTCTCAGACATATGAAGGAAGATCAAC 1071
Query 1075 TTAA-AAAGTTCAACTATTGCCTTCCTTACATCAA-CAACCCATATAAGGTTGATGA-CT 1131
|||| ||| || | |||||||||||||| || | |||||| | ||||| ||||| ||
Sbjct 1072 TTAAGAAATTTGAG-TATTGCCTTCCTTATTTCTATCAACCCTT-TAAGGAAGATGAACT 1129
Query 1132 CTGAGA-AGAGCACTGTGGTTAAAATAATGTTCCCTTCTGAGCCACCAGTTGAATGTGAA 1190
||| | |||| |||| ||| ||||||||||||| ||||| || || |||| |||||||
Sbjct 1130 -TGA-ACAGAGTACTGAGGTCCAAATAATGTTCCCCTCTGAACCCCCGGTTGTATGTGAA 1187
Query 1191 TATGACTGGGTGAAA-AGCGT-CATTGAGGAATTCACCGACAGTCTGATC-AATGAGGAG 1247
| |||||||| | | || | || ||||||| ||| | ||| | || |||||
Sbjct 1188 TTTGACTGGGAGTTTGA-CGAAC-TTCAGGAATTTGTCGATAAACTGGTTGAA-GAGGAA 1244
Query 1248 GTATTAC-TCCCGGAACAAAAGGTTGCGTTCGAGGAGTTTGTCAAAGAGAAAAGT--GA- 1303
| ||||| | | | |||||| || || ||| | || | |||||||||| || || ||
Sbjct 1245 GCATTACCTGCTG-AACAAACGGATGAATTCAAAGAATATGTCAAAGAGCAA-GTTCGAG 1302
Query 1304 CAAAGCTATGGCAGCTTAT-GACACGGCACAAGAAGCCCTAGAGAAAGCAA-AGGAAGGA 1361
|| || | | ||| || || | | || |||| || | | ||||||||| || ||| |
Sbjct 1303 CA--GCAAAGAAAGCAAATCGAGAAGCCA-AAGATGCTCGAAAGAAAGCAATAG-AAGAA 1358
Query 1362 CTGAGCGAAGAAACaaaaaaaGCCTATCAAGAA-ATGAGGTTGTACAAGTTTTATCCATT 1420
|||||||||| || || |||||| |||| || |||| ||| ||||| || || ||
Sbjct 1359 ATGAGCGAAGATACTAAGCAAGCCTTTCAA-AAGATGAAGTTCTACAAATTCTACCCCCA 1417
Query 1421 GCCTTCACCAGACACACC 1438
|||||||||||| |||||
Sbjct 1418 GCCTTCACCAGATACACC 1435
> Ahg906915 jgi|Araly1|906915|Al_scaffold_0003_4043
Length=258
Score = 86.1 bits (46), Expect = 7e-16
Identities = 59/65 (91%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 948 ATGGCTTGGGTTCCTTACATCCCACTTGAACAAAGGGATAGACAAGTTGATA-ATAAGAA 1006
|||| |||||||| |||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGGATTGGGTTCTTTACGTCCCACTTGAACAAAGGGATAGACAAGTTGATAGA-AAGAA 59
Query 1007 CTTTC 1011
| |||
Sbjct 60 CCTTC 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5