BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64920.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496711 jgi|Araly1|496711|fgenesh2_kg.8__2527__AT5G64920.1 1786 0.0
Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040 106 6e-22
> Ahg496711 jgi|Araly1|496711|fgenesh2_kg.8__2527__AT5G64920.1
Length=1301
Score = 1786 bits (967), Expect = 0.0
Identities = 1234/1352 (91%), Gaps = 61/1352 (5%)
Strand=Plus/Plus
Query 32 TCCTCTTAATCGGCTTATCGGATCCGAATCCGGACCCGAAAGCCTGAAAACCCGACGATT 91
||||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||| |
Sbjct 1 TCCTCTTAAACGGCTTATCGGATCCGAATACGGACCCGAGAGCCCGTTAACCCGACGA-T 59
Query 92 A-ATTGCACGATGTCCGATGCTCCGTCGTCTTCCCCGGATGCCACGGCGTCGCACTGGTG 150
| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 60 ATATAGCACGATGTCCGATGCTCCGTCGTCTTCTCCGGATGCCACGGCATCGCACTGGTG 119
Query 151 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTTGTCGTGTGCTGCGA 210
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 120 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTGGTCGTGTGTTGCGA 179
Query 211 ATGTAACAAAGGTTTCGTCGAGTCAATTCAACCGACTCCCGCCGCTTATTCATCGCCGGC 270
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 180 ATGTAACAAAGGTTTCGTCGAGTCAATTCAGCCGATTCCGGCCGCTTATTCATCGCCGGC 239
Query 271 GCCACCGCAGCCACTTTCCCCAGATCTGAATGTAGAAGACTCCAGTATTGGCTCGCATTT 330
|||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 240 GCCACCGCAGCCGCTTTCCCCAGATCTGACTATAGAAGACTCCAGTATTGGCTCGCATTT 299
Query 331 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 359
Query 391 TGATGTTTTATCTTACGAAGATGATTTCTTCAGGTTGGAGCTCAATAGTagaaacgaaat 450
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TGATGTGTTATCTTACGAAGATGATTTCTTCAGATTGGAGCTCAATAGTAGAAACGAAAT 419
Query 451 cgacgatgacgaagacgaagatgaagatgatggagatgaagaagaagagga---tgagga 507
|||||| | | || | |||||||| ||||||||||||||||||||||| ||||||
Sbjct 420 CGACGA--A-GTTGA--A-GATGAAGAAGATGGAGATGAAGAAGAAGAGGAGGATGAGGA 473
Query 508 agagaatttaaccgtcaacgacgaagaagacgaagaagaTGATCTGAGGAGGAGAAATCG 567
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 474 AGAGAATTTAACCGTCAACGACGAAGAAGAGGAAGAAGATGATCTGAGGAGGAGAAATCG 533
Query 568 TTTTCCTCTCACGACGACGCAGTCGAGAACCGGAAGAAACAGAATTCTCGATTGGGCTGA 627
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 534 ATTTCCTCTCACGACGACGCGGTCGAGAACGGGAAGAAACAGAATTCTCGATTGGGCTGA 593
Query 628 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGATCGATACGC 687
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 594 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGAACGGTACAC 653
Query 688 AGGAAATCCGGCTGATTACATAGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 747
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGGAAATCCGGCTGATTACATCGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 713
Query 748 AGCAGAAGGAGATGGTGGTGGTGGCGGAGGAAGGAGAGGCGCACCACCGGCTGCGAAATC 807
|||||||||||| ||||||||||| ||| | |||||||||||||||||||||| |||||
Sbjct 714 AGCAGAAGGAGACGGTGGTGGTGGTGGA--A-GGAGAGGCGCACCACCGGCTGCAAAATC 770
Query 808 GGCAATAGAGGCATTGGAGACTTT-CGAGGTTAGTTCTTCGGAGGGAGAGATGGTTATGG 866
||| ||||| || ||||||||||| | |||||| ||||||||||||||||| ||||||||
Sbjct 771 GGCCATAGAAGCGTTGGAGACTTTTC-AGGTTACTTCTTCGGAGGGAGAGACGGTTATGG 829
Query 867 TTTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACTGGTAAGAAGTTACCGTGTG 926
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 830 TGTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACCGGTAAAAAGTTACCGTGTG 889
Query 927 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 949
Query 987 TCTGTAGATTCCAGCTTGAGACTGATGATGCTGAATATGAGGAAGAGAGGaaaaaaaGAA 1046
||||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 950 TCTGTAGATTCCAGCTTCAGACTGATGATGCTGAGTACGAGGAAGAGAGGAAGAAAAGAA 1009
Query 1047 CTTCTACCGTGTCAGATTCTGCTGCTGCTTCTTCTTCTTCTTCAACTTCTCGTTACTGAA 1106
|||||||| |||||||||||||| ||||||||||||| |||| | | || ||| ||
Sbjct 1010 CTTCTACCATGTCAGATTCTGCTACTGCTTCTTCTTCGGCTTC---T-C--GTCACT-AA 1062
Query 1107 GTGGAGGAAATGCCCCCATTTGTTGTTACTTTTGTTGTTACTCTTTCTCTTTAGATTAAT 1166
| | || |||||| |||| ||||||||||||||||||||||||||
Sbjct 1063 ----A-----T-------TT-GTTGTTCCTTT-GTTGTTACTCTTTCTCTTTAGATTAAA 1104
Query 1167 -CTTTGCTTAGTCTCTCAACACTATTTGGTTGGTTGCATGTTGCATCAAAGAAGCGAGAA 1225
|||||||||||||||||||||| ||||||||||||||| || | | | ||||
Sbjct 1105 ACTTTGCTTAGTCTCTCAACACTGTTTGGTTGGTTGCAT----CA--A--GTA---AGAA 1153
Query 1226 AACAGAGAACaaaaaaaaaaaaTCCGGCTCCAAAAAGACAATTGTTATTTGTAAGTGTGT 1285
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 1154 AACAGAGAACAAAAAAAAA---TCCGGCTCCAAAA-GACTATTGTTATTTGTAAGTGTGT 1209
Query 1286 TGTATCTTTGGCCTAAACAATCCCATAGTGGTTT-CTTT-GATTCTCAGTTGTTCATAAA 1343
||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 1210 TGTATCTTTGGCCTAAACAATTCCATAGTGGTTTTCTTTTGATTCTCAGTTGTTCATAAT 1269
Query 1344 GTTTGCCGAA--ACAAAAAGGTTCCTGGGTTT 1373
|||||||||| ||||||||||||||||||||
Sbjct 1270 GTTTGCCGAATCACAAAAAGGTTCCTGGGTTT 1301
> Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040
Length=1386
Score = 106 bits (57), Expect = 6e-22
Identities = 62/64 (97%), Gaps = 1/64 (2%)
Strand=Plus/Minus
Query 1354 ACAAAAAGGTTCCTGGGTTTAGGAGAAACGGTTACAGGACTTCGTGAGCCTTCCCGAAGT 1413
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1384 ACAAAAAGGTTCCTGGGTTT-GGAGTAACGGTTACAGGACTTCGTGAGCCTTCCCGAAGT 1326
Query 1414 ACCT 1417
||||
Sbjct 1325 ACCT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5