BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64930.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496712 jgi|Araly1|496712|fgenesh2_kg.8__2528__AT5G64930.1 2333 0.0
> Ahg496712 jgi|Araly1|496712|fgenesh2_kg.8__2528__AT5G64930.1
Length=1829
Score = 2333 bits (1263), Expect = 0.0
Identities = 1679/1871 (90%), Gaps = 64/1871 (3%)
Strand=Plus/Plus
Query 21 ATGGAAGCCCTCCTCCTCCCTCCTTCGCCGGAACCCCAAAATCAAATCACCAATCCGGCG 80
|||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 ATGGAAGCCCTCCTCCTCGCTCCTTCGCCGGAACCCCAAAATCCCATCACCGATCCGGCG 60
Query 81 AATTCAAAGCCAAATCATCAATCTGGTGACGTACATAAAGATGAGACGATGATGATgaag 140
||||||||||| ||||||||||||| ||| ||| |||||||||||||||| | ||||
Sbjct 61 AATTCAAAGCCTAATCATCAATCTGACGACAAACACAAAGATGAGACGATGA--A-GAAG 117
Query 141 aagaagaaggatacgaatccatcgaatttggaaaagagaaaactcaagggaaagaagaaa 200
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGAAGAAGAAAACGAATCCATCGAATTTGGAAAAGAGAAAACTCAAGGGAAAGAAGAAA 177
Query 201 gaGATTATGGACAACGACGAAGCTTCTTCGTCCT-ATTGTTCTACATCTTCTACCTCTAA 259
||||||||| |||||||||||||||| || |||| | ||||| |||||||||||||||||
Sbjct 178 GAGATTATGAACAACGACGAAGCTTCATCTTCCTCA-TGTTCCACATCTTCTACCTCTAA 236
Query 260 TTCAAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTA---TGCG 316
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 CCCCAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTACGGTGCG 296
Query 317 GTTAGGTATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAAAATTGGCGAAGCCTCT 376
||||| |||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 297 TTTAGGGATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAGCCTTAGCCAAGCCTCT 356
Query 377 GGGCTTTTCACTTGCCGCTTTTGCTAATATGGTTATTGCGAGAAAGAATGCCGCAGGTCA 436
|||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct 357 GGGCTTTTCATTTGCGGCTTTAGCTAATCTGGTTCTTGCGAGAAAGAATGCCGCGGGTCA 416
Query 437 GAATGTTTATGTTGATGATCTTGTTGAGATCTTTGCTA-CTCTTGTCGA-AGAATCATTA 494
||||||||||||||||||||||| |||||||| ||||| | | |||| | ||||||||||
Sbjct 417 GAATGTTTATGTTGATGATCTTGCTGAGATCTCTGCTACCGC-TGTC-ACAGAATCATTA 474
Query 495 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAAACATTCAGC 554
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 475 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAATCATTCAAC 534
Query 555 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTCAAACAAT 614
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 535 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTTAAACAAT 594
Query 615 AATGATGGTGGGAGTTGTAATTTAGATCGCTCTACCATAGACGGATGCTCAGACACCGAG 674
||||||| | ||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct 595 AATGATGTTAGGAGTTGTAATTTAGATTGCTCTACAATAGACGGATGCTCGGACACCGAG 654
Query 675 CTATTTGAGAGGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATGCAAGGCAGTGCA 734
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 ---TTTGAAAAGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATACAAGGCAGTGCA 711
Query 735 ACAGCAACCTCTTTGATGAATGAGCTTGCCCTTTTCGAAGAGACTCTACAACTCTCTTGT 794
| ||||||||||||| |||||||||||| ||| | |||| |||||| |||||||||||||
Sbjct 712 AGAGCAACCTCTTTGGTGAATGAGCTTGTCCTGTACGAACAGACTCGACAACTCTCTTGT 771
Query 795 GTCCCTCCTAGAAGTTCAGCAATGGCTTTGACCACAGACGAAAGGTTTTTAAAAGAGC-A 853
|||| |||||| |||||| ||||| ||||||||||| ||| || | | || |||||| |
Sbjct 772 GTCCTTCCTAGCAGTTCATCAATGTCTTTGACCACATTCGATAGATCTGTAGAAGAGCTA 831
Query 854 AACACGAGCAAACGACCTAAAGACCGTGGAGATTGGTCTTCA-AATAAGAGAGTTAA-GG 911
|| ||||||||||||||||||| ||| ||||| ||||||| | || ||| |||||| |
Sbjct 832 AA-ACGAGCAAACGACCTAAAGTCCGAGGAGAATGGTCTT-ACAAGGAGAAAGTTAATGT 889
Query 912 TGCAAAGAGACGGCGCTAGGATTAAAATTTGAATCAAACAACCTGGGGAAAGCGGCGCTA 971
|| || |||| || ||| |||||||| ||||||||||| ||||||||| || ||||
Sbjct 890 TG-AAGGAGATGGATCTATCATTAAAATACGAATCAAACAATCTGGGGAAATCGAAGCTA 948
Query 972 GAGTTGGAT-GTTTCGAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1030
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GAGATGGATGGTTT-GAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1007
Query 1031 TACAAGAAAAGAAGAGATGGTCACAAGAATCATGGATTGGCTCCTCGTAAGTGTCT-TCA 1089
||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | |
Sbjct 1008 TACAAGAAAAGCCGAGATGGTCACAAGGATCATGGATTGGCTCGTCGTAAGTGTCTGT-A 1066
Query 1090 GCATGTTGGCTTCTATGGTACTTGGCGTTTACAATTTTTCA-ATAAAGAGAATCGAGGAT 1148
||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1067 GCATGTTGGCTTCTATGTTACTTGGCGTTTACAATTTTTCACA-AAAGAGAATCAAGGAC 1125
Query 1149 GCTACCTCAGTATGCGA-CCAATCCGAGGAGAAAAGTTCGTCGTGGTGGGTTCCTAAACA 1207
|| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 1126 GCAACCTCAGTATGCGAGCC-ATCCGAGGAGAAAAGTTCATCGTGGTGGGTTCCTAAACA 1184
Query 1208 AGTTTCATCGATTAACTCAGGCTTCAACACCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1267
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1185 AGTTTCATTGATGAACTCAGGCTTCAACATCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1244
Query 1268 GATATTTTTCGGTGTGTTAATGATCATTGTCTTCACTTACTTTCTAAACAAACGATCATC 1327
||| ||||||||||| |||||||||||||||||||| |||||| ||| |||||| ||| |
Sbjct 1245 GATCTTTTTCGGTGTCTTAATGATCATTGTCTTCACATACTTTATAAGCAAACGCTCAGC 1304
Query 1328 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1364
Query 1388 TGTATCGGGTAAATTGTGTGTGGACACATTGGGCGGTGATGGCAAACTCTGGCTAATAGT 1447
| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| ||
Sbjct 1365 TATATCGGGTAAGTTGTGTGTGGACACACTGGGCGGTAACGGCAAACTCTGGCTAATTGT 1424
Query 1448 TTGGGAAGTGTTTTGCCTTTTGCAATTCGTTGCAAATGTCTTCACATTGGCTTTGTATGG 1507
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 1425 TTGGGAAGTGTTTTGCCTTTTCCAATTCGTTGCAAATGTCTTCGCATTGGCTTTGTATAG 1484
Query 1508 TCTAATGTTCGGTCCTATAAACGTGACTCAAGAGACCAGATCGAACCGTTGTAACAGTAT 1567
|||||||||||||| |||||||||||||||| | || | |||||||||||||||
Sbjct 1485 TCTAATGTTCGGTCGTATAAACGTGACTCAAT---C--GA--G--CCGTTGTAACAGTAT 1535
Query 1568 GTTTCCATATTGGGCAAGGCGCAGTGTCGTGTATGTGGTGATTCTGTTTGTTCTTCCAGT 1627
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1536 GTTTCCATATTGGGCAAGGCGCAGTGTCTTGTATGTGGTGATTCTGTTTGTTCTTCCAGC 1595
Query 1628 CATAAACGGTCTTTTGCCATTTGCAACATTTGGTGAATGGAGAGACTTCGCTATGTATCA 1687
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1596 CATAAACGGTCTTTTGCCATTTGCGACATTTGGTGAATGGAGAGACCTCGCTATGTATCA 1655
Query 1688 CCTTCATGGTGGGTCT-GACTATGCTTGAGACGAGGAGGCCATCtttgtattgtaattta 1746
||| |||||||| | |||| || || | | | || |||||||||||||| |||
Sbjct 1656 GTTTCTTGGTGGGT-TAGACTC--CT-GA-A-G-GC---CC-TCTTTGTATTGTAACTTA 1704
Query 1747 ttgtaacgatttgggttttttaatcttattttattttatGGGTGCTGTTGAAACAATTGT 1806
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1705 TTGTAACGATTTGGTTTTTTTAATCCTATTTTATTGTATGGGTGCTGTTGAAACAATTGT 1764
Query 1807 ATCGCTATTACAAAGTT-ATGTAT--T-----CGAGTTATATGTTTGTATTGTTGTCAAA 1858
|| |||||||||||||| |||||| | |||||||||| | || | |||||||||
Sbjct 1765 ATGGCTATTACAAAGTTTATGTATAATGTATTCGAGTTATAT-T--GT-T-GTTGTCAAA 1819
Query 1859 AGAAATTAAAA 1869
|||||| ||||
Sbjct 1820 AGAAAT-AAAA 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5