BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64930.1 Length=1888 Score E Sequences producing significant alignments: (Bits) Value Ahg496712 jgi|Araly1|496712|fgenesh2_kg.8__2528__AT5G64930.1 2333 0.0 > Ahg496712 jgi|Araly1|496712|fgenesh2_kg.8__2528__AT5G64930.1 Length=1829 Score = 2333 bits (1263), Expect = 0.0 Identities = 1679/1871 (90%), Gaps = 64/1871 (3%) Strand=Plus/Plus Query 21 ATGGAAGCCCTCCTCCTCCCTCCTTCGCCGGAACCCCAAAATCAAATCACCAATCCGGCG 80 |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| Sbjct 1 ATGGAAGCCCTCCTCCTCGCTCCTTCGCCGGAACCCCAAAATCCCATCACCGATCCGGCG 60 Query 81 AATTCAAAGCCAAATCATCAATCTGGTGACGTACATAAAGATGAGACGATGATGATgaag 140 ||||||||||| ||||||||||||| ||| ||| |||||||||||||||| | |||| Sbjct 61 AATTCAAAGCCTAATCATCAATCTGACGACAAACACAAAGATGAGACGATGA--A-GAAG 117 Query 141 aagaagaaggatacgaatccatcgaatttggaaaagagaaaactcaagggaaagaagaaa 200 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 AAGAAGAAGAAAACGAATCCATCGAATTTGGAAAAGAGAAAACTCAAGGGAAAGAAGAAA 177 Query 201 gaGATTATGGACAACGACGAAGCTTCTTCGTCCT-ATTGTTCTACATCTTCTACCTCTAA 259 ||||||||| |||||||||||||||| || |||| | ||||| ||||||||||||||||| Sbjct 178 GAGATTATGAACAACGACGAAGCTTCATCTTCCTCA-TGTTCCACATCTTCTACCTCTAA 236 Query 260 TTCAAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTA---TGCG 316 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 237 CCCCAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTACGGTGCG 296 Query 317 GTTAGGTATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAAAATTGGCGAAGCCTCT 376 ||||| |||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 297 TTTAGGGATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAGCCTTAGCCAAGCCTCT 356 Query 377 GGGCTTTTCACTTGCCGCTTTTGCTAATATGGTTATTGCGAGAAAGAATGCCGCAGGTCA 436 |||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||| ||||| Sbjct 357 GGGCTTTTCATTTGCGGCTTTAGCTAATCTGGTTCTTGCGAGAAAGAATGCCGCGGGTCA 416 Query 437 GAATGTTTATGTTGATGATCTTGTTGAGATCTTTGCTA-CTCTTGTCGA-AGAATCATTA 494 ||||||||||||||||||||||| |||||||| ||||| | | |||| | |||||||||| Sbjct 417 GAATGTTTATGTTGATGATCTTGCTGAGATCTCTGCTACCGC-TGTC-ACAGAATCATTA 474 Query 495 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAAACATTCAGC 554 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 475 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAATCATTCAAC 534 Query 555 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTCAAACAAT 614 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 535 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTTAAACAAT 594 Query 615 AATGATGGTGGGAGTTGTAATTTAGATCGCTCTACCATAGACGGATGCTCAGACACCGAG 674 ||||||| | ||||||||||||||||| ||||||| |||||||||||||| ||||||||| Sbjct 595 AATGATGTTAGGAGTTGTAATTTAGATTGCTCTACAATAGACGGATGCTCGGACACCGAG 654 Query 675 CTATTTGAGAGGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATGCAAGGCAGTGCA 734 ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 655 ---TTTGAAAAGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATACAAGGCAGTGCA 711 Query 735 ACAGCAACCTCTTTGATGAATGAGCTTGCCCTTTTCGAAGAGACTCTACAACTCTCTTGT 794 | ||||||||||||| |||||||||||| ||| | |||| |||||| ||||||||||||| Sbjct 712 AGAGCAACCTCTTTGGTGAATGAGCTTGTCCTGTACGAACAGACTCGACAACTCTCTTGT 771 Query 795 GTCCCTCCTAGAAGTTCAGCAATGGCTTTGACCACAGACGAAAGGTTTTTAAAAGAGC-A 853 |||| |||||| |||||| ||||| ||||||||||| ||| || | | || |||||| | Sbjct 772 GTCCTTCCTAGCAGTTCATCAATGTCTTTGACCACATTCGATAGATCTGTAGAAGAGCTA 831 Query 854 AACACGAGCAAACGACCTAAAGACCGTGGAGATTGGTCTTCA-AATAAGAGAGTTAA-GG 911 || ||||||||||||||||||| ||| ||||| ||||||| | || ||| |||||| | Sbjct 832 AA-ACGAGCAAACGACCTAAAGTCCGAGGAGAATGGTCTT-ACAAGGAGAAAGTTAATGT 889 Query 912 TGCAAAGAGACGGCGCTAGGATTAAAATTTGAATCAAACAACCTGGGGAAAGCGGCGCTA 971 || || |||| || ||| |||||||| ||||||||||| ||||||||| || |||| Sbjct 890 TG-AAGGAGATGGATCTATCATTAAAATACGAATCAAACAATCTGGGGAAATCGAAGCTA 948 Query 972 GAGTTGGAT-GTTTCGAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1030 ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 GAGATGGATGGTTT-GAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1007 Query 1031 TACAAGAAAAGAAGAGATGGTCACAAGAATCATGGATTGGCTCCTCGTAAGTGTCT-TCA 1089 ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | | Sbjct 1008 TACAAGAAAAGCCGAGATGGTCACAAGGATCATGGATTGGCTCGTCGTAAGTGTCTGT-A 1066 Query 1090 GCATGTTGGCTTCTATGGTACTTGGCGTTTACAATTTTTCA-ATAAAGAGAATCGAGGAT 1148 ||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||| Sbjct 1067 GCATGTTGGCTTCTATGTTACTTGGCGTTTACAATTTTTCACA-AAAGAGAATCAAGGAC 1125 Query 1149 GCTACCTCAGTATGCGA-CCAATCCGAGGAGAAAAGTTCGTCGTGGTGGGTTCCTAAACA 1207 || |||||||||||||| || |||||||||||||||||| |||||||||||||||||||| Sbjct 1126 GCAACCTCAGTATGCGAGCC-ATCCGAGGAGAAAAGTTCATCGTGGTGGGTTCCTAAACA 1184 Query 1208 AGTTTCATCGATTAACTCAGGCTTCAACACCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1267 |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1185 AGTTTCATTGATGAACTCAGGCTTCAACATCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1244 Query 1268 GATATTTTTCGGTGTGTTAATGATCATTGTCTTCACTTACTTTCTAAACAAACGATCATC 1327 ||| ||||||||||| |||||||||||||||||||| |||||| ||| |||||| ||| | Sbjct 1245 GATCTTTTTCGGTGTCTTAATGATCATTGTCTTCACATACTTTATAAGCAAACGCTCAGC 1304 Query 1328 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1305 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1364 Query 1388 TGTATCGGGTAAATTGTGTGTGGACACATTGGGCGGTGATGGCAAACTCTGGCTAATAGT 1447 | |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| || Sbjct 1365 TATATCGGGTAAGTTGTGTGTGGACACACTGGGCGGTAACGGCAAACTCTGGCTAATTGT 1424 Query 1448 TTGGGAAGTGTTTTGCCTTTTGCAATTCGTTGCAAATGTCTTCACATTGGCTTTGTATGG 1507 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | Sbjct 1425 TTGGGAAGTGTTTTGCCTTTTCCAATTCGTTGCAAATGTCTTCGCATTGGCTTTGTATAG 1484 Query 1508 TCTAATGTTCGGTCCTATAAACGTGACTCAAGAGACCAGATCGAACCGTTGTAACAGTAT 1567 |||||||||||||| |||||||||||||||| | || | ||||||||||||||| Sbjct 1485 TCTAATGTTCGGTCGTATAAACGTGACTCAAT---C--GA--G--CCGTTGTAACAGTAT 1535 Query 1568 GTTTCCATATTGGGCAAGGCGCAGTGTCGTGTATGTGGTGATTCTGTTTGTTCTTCCAGT 1627 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1536 GTTTCCATATTGGGCAAGGCGCAGTGTCTTGTATGTGGTGATTCTGTTTGTTCTTCCAGC 1595 Query 1628 CATAAACGGTCTTTTGCCATTTGCAACATTTGGTGAATGGAGAGACTTCGCTATGTATCA 1687 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1596 CATAAACGGTCTTTTGCCATTTGCGACATTTGGTGAATGGAGAGACCTCGCTATGTATCA 1655 Query 1688 CCTTCATGGTGGGTCT-GACTATGCTTGAGACGAGGAGGCCATCtttgtattgtaattta 1746 ||| |||||||| | |||| || || | | | || |||||||||||||| ||| Sbjct 1656 GTTTCTTGGTGGGT-TAGACTC--CT-GA-A-G-GC---CC-TCTTTGTATTGTAACTTA 1704 Query 1747 ttgtaacgatttgggttttttaatcttattttattttatGGGTGCTGTTGAAACAATTGT 1806 |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1705 TTGTAACGATTTGGTTTTTTTAATCCTATTTTATTGTATGGGTGCTGTTGAAACAATTGT 1764 Query 1807 ATCGCTATTACAAAGTT-ATGTAT--T-----CGAGTTATATGTTTGTATTGTTGTCAAA 1858 || |||||||||||||| |||||| | |||||||||| | || | ||||||||| Sbjct 1765 ATGGCTATTACAAAGTTTATGTATAATGTATTCGAGTTATAT-T--GT-T-GTTGTCAAA 1819 Query 1859 AGAAATTAAAA 1869 |||||| |||| Sbjct 1820 AGAAAT-AAAA 1829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70924036190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5