BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64950.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951335 jgi|Araly1|951335|scaffold_803222.1 1002 0.0
> Ahg951335 jgi|Araly1|951335|scaffold_803222.1
Length=1189
Score = 1002 bits (542), Expect = 0.0
Identities = 689/759 (91%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 24 CCTAAACTTTCGTTTCCAAG-ATGCAATTTCTAGCTTCTCTCGTTTCCAATTCCAGAAAG 82
|||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CCTAGACTTTCGTTTCC-AGTATGCAATTTCTAGCTTCTCTCGTTTCCAATTCCCGAAAT 59
Query 83 TTTGGTCGGAGATGGGATCGAGCTCTCTCGTTGCATCATTTCTCTTCGAATGCGACACCA 142
||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||| | |
Sbjct 60 TTTCGTCGGAGATGGAACCGAGCTCTCTCTTTGCATCATTTCTCTTGGAATGCGAGAGAA 119
Query 143 GCTTC-GATATCAAATCCAGCGTTCGTCGAGTTTCTCAGGGACAATGGGTTCCAGAAACC 201
||||| || | ||||| | | ||||||||| |||||||||||||||||||||||||||||
Sbjct 120 GCTTCGGA-ACCAAATGCGGTGTTCGTCGAATTTCTCAGGGACAATGGGTTCCAGAAACC 178
Query 202 TCTAGCAATTGCCATCGCAATGCGTTACCCTAACCTCAAATCCCTAGAACAACCTCGGTC 261
|| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 179 TCAAGCAATGGCCATCGCAATGCGTTACCCTAATCTCAAATCCCTAGAACAACCTCGATC 238
Query 262 AGTGATTCAAATGCTTAAAAGTTACAGTTTTTCCGATACCCAGATCCAGAAATCGATCCG 321
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 AGTGATTCAAATGCTTAAAAGTTACAGTTTTTCAGATACCCAGATCCAGAAATCGATCCG 298
Query 322 GGTCCATCCTCGAATGATGTTCTACAACGTGGAGAA-AATTCTAGAACCCAAACTTCGAT 380
||||||||||| ||||||||||||||| || ||||| ||| |||||||||||||||||||
Sbjct 299 GGTCCATCCTCAAATGATGTTCTACAAAGTCGAGAAGAAT-CTAGAACCCAAACTTCGAT 357
Query 381 TCTTTAAAGATATTGGATT-TACTGGCTCTGGTCTTGGTAAGTTCGTCTCTCAAAACTCA 439
||||| |||| |||||||| | ||||||||| |||||||||||||||||||||| | ||
Sbjct 358 TCTTTGAAGAAATTGGATTCT-CTGGCTCTGATCTTGGTAAGTTCGTCTCTCAACATTCC 416
Query 440 TCAGTCGTTGGTGTAAGTCTAGTGA-AGAAATTGATTCCTACCGTTGAGATTCTGAAATC 498
|| | | ||||| |||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 417 TCCGGCATTGGTATAAGTCTAGTGAGAAAAAT-GATTCCTACCGTTGAGATTCTGAAATC 475
Query 499 GATTGTTGCCCCAAAACATGAAGACCTTCCTGTCATTCTTAGTAGATGTGGTTGGCTTCT 558
|||||| || |||||||| ||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 476 GATTGTGGCTCCAAAACACGAACACCTTACTGTGATTCTTAGTAGATGTGGTTGGCTTCT 535
Query 559 TCTCAGTAGAGACCCTAACTTGTTTCTCTTACCAAACATCTCATACCTTGAAACCTGTGG 618
| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 536 -CG--GTAGAGACCCTAACTTGTTTCTCTTACCAAACATCTCTTACCTCAAAACCTGTGG 592
Query 619 AATTGTTGGGTCTCAGCTTGCTTCTTTACTTAGAAGACAGCCAAGAATCTTCAATCTCTC 678
||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 593 AATCGTTGAGTCTCAGCTTGCTTCTTTACTTAGAAGACAGCCAAGGATCTTCAATGTCCC 652
Query 679 TGAGGAAAAACTCAGAGGATATGTCTCTCGTGCTTTGGATCTTGGTTTTACTTTGAACTC 738
|||||||||||||||||| ||||||||||||||| |||| || ||||||| | |||||||
Sbjct 653 TGAGGAAAAACTCAGAGGGTATGTCTCTCGTGCTCTGGAACTCGGTTTTAATCTGAACTC 712
Query 739 GAGGATGCTTGTGCACGCTGTTATCTCGTTAAGTTCTTT 777
|||||||||||||||||||||| ||||||||||||||||
Sbjct 713 GAGGATGCTTGTGCACGCTGTTCTCTCGTTAAGTTCTTT 751
Score = 472 bits (255), Expect = 4e-132
Identities = 312/339 (92%), Gaps = 5/339 (1%)
Strand=Plus/Plus
Query 837 ATGAGATAACAGATATTATACGAAGATCTCCAGGTTTGATCCGGTGCTCAGAAGATAAGC 896
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 754 ATGAGATAACAGATATTATACGAAGATCTCCAGGTTTGATCCGGTGCGCAGAAGATAAGC 813
Query 897 TTACACTGGGGTTTGAGTTTTACTTGAAGAGAATGGGGTTAGAGAGGGAAGCTTTGGCGA 956
||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||
Sbjct 814 TTACACTGGGGTTTGAGTTTTACATGAAGAGAATGGGGATAGAGAGAGAAGCTTTGGTGA 873
Query 957 AACGTCCTTGTGTGTTG-TCGTATAATCTTGAGAAGAGGGTGATTCCTAGGCTTAAAGTT 1015
||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 874 AACGTCCGTGTGTGTTGAT-GTATAATCTTGAGAAGAGGGTGATTCCAAGGCTTAAAGTT 932
Query 1016 TTGCAGATCTTGAGGGAAAAAGGGTTGTTGTTAAAAGAGGAGAAGAAGAAGAAGAA---C 1072
||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 933 TTGCAGATCTTGAGGGAAAAAGGGTTGTTATTGGAAGAGGAGAAGAAGAAGAAGAAGAAC 992
Query 1073 ATGGTTGGCATTGTTGAGATGACTGAGGAAGCTTTTCTAGAGAAATATGTTGTGAGATTT 1132
||| ||| |||||| ||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 993 ATGTTTGACATTGTGGAGATGACTGAGGAAGCTTTTCTGGAGAAATATGTGGTAAGATTT 1052
Query 1133 GGAGATGAGATTGCTGAGGAACTGCTGGTTGCTTACAAG 1171
|||||||||| |||||||||| | |||| ||||| |||
Sbjct 1053 GGAGATGAGACTGCTGAGGAATTATTGGTAGCTTATAAG 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5