BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64960.1
Length=2135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951336 jgi|Araly1|951336|scaffold_803223.1 2503 0.0
Ahg487853 jgi|Araly1|487853|fgenesh2_kg.6__987__AT5G10270.1 1600 0.0
Ahg951337 jgi|Araly1|951337|scaffold_803224.1 163 4e-39
> Ahg951336 jgi|Araly1|951336|scaffold_803223.1
Length=1587
Score = 2503 bits (1355), Expect = 0.0
Identities = 1515/1590 (95%), Gaps = 19/1590 (1%)
Strand=Plus/Plus
Query 100 TCAGA-T-TCGGTTGAATAATGGCGGCTGCGGCTTTTGGGCAGTTAAATCTAGAGGAGCC 157
||||| | || ||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 4 TCAGATTCTCTGTTGAATCATGGCGGTTGCGGCTTTTGGGCAGTTAAATCTCGAGGAGCC 63
Query 158 TCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTCGAGAAGCTTGAACAGATTGGTGA 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TCCACCGATTTGGGGATCTCGTAGTGTCGATTGCTTCGAGAAGCTTGAACAGATTGGTGA 123
Query 218 AGGAACTTACGGCCAAGTGTACATGGCTAAAGAAATTAAAACTGGTGAAATCGTGGCTCT 277
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGGAACTTACGGTCAAGTGTACATGGCTAAAGAAATTAAAACTGGTGAAATCGTGGCTCT 183
Query 278 GAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTTCCGATAACCGCTATCCGGGAGAT 337
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 184 CAAAAAGATCCGTATGGACAATGAAAGAGAAGGGTTTCCGATAACAGCTATCCGGGAGAT 243
Query 338 CAAAATTCTGAAGAAGCTGCATCATGAAAATGTCATCCATTTGAAAGAGATTGTTACTTC 397
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 244 AAAAATTCTGAAGAAGCTACATCATGAAAATGTCATCCATTTGAAAGAGATTGTGACTTC 303
Query 398 TCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGATAATAACAAATACAAGGGTGGAAT 457
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 304 TCCAGGTCGAGATAGGGATGATCAAGGAAAGCCAGATAATAATAAATACAAGGGTGGAAT 363
Query 458 CTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTACATGGTCTTTGAGTACATGGATCATGACTTGACTGGACTTGCTGATCGTCCTGGACT 423
Query 518 GAGATTTACGGTTCCTCAGATAAAGTGTTACATGAAGCAACTGCTGACTGGGCTTCACTA 577
||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 424 GAGATTTACTGTCCCTCAGATAAAGTGTTACATGAAGCAACTGCTCACTGGGCTCCACTA 483
Query 578 TTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGGTTCGAATCTACTTATTGACAA 637
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 484 TTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGGTTCGAACCTACTTATTGACAA 543
Query 638 TGAGGGAAATTTAAAGCTAGCGGATTTTGGGCTTGCTCGGTCATATTCTCATGATCATAC 697
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 TGAGGGAAATTTAAAGCTTGCGGATTTTGGGCTTGCTCGGTCATTTTCTCATGATCATAC 603
Query 698 TGGAAACCTCACAAATCGTGTCATCACTTTGTGGTATAGGCCCCCTGAATTGTTACTTGG 757
||||||||| ||||| ||||||||||| |||||||||||||| || |||||| |||||||
Sbjct 604 TGGAAACCTTACAAACCGTGTCATCACATTGTGGTATAGGCCTCCGGAATTGCTACTTGG 663
Query 758 TGCAACTAAATATGGACCAGCGATTGACATGTGGTCAGTTGGATGCATATTTGCTGAACT 817
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 664 TGCAACTAAATATGGACCAGCGATTGACATGTGGTCGGTTGGATGCATATTTGCTGAACT 723
Query 818 TTTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGAATGAACAATTGAATAAGATTTA 877
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 724 TCTGAATGGAAAACCAATCTTGCCTGGGAAAACTGAGAGTGAACAACTGAATAAGATTTA 783
Query 878 TGAGCTTTGTGGATCACCTGATGAAAGCAACTGGCCTGGAGTTTCCAAGATGCCTTGGTA 937
||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 784 TGAACTTTGTGGATCACCGGATGAAAACAACTGGCCTGGAGTTTCCAAGATGCCTTGGTA 843
Query 938 TAACCAAATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGACACTT 997
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 844 TGGCCAAATGAAATCATCTCGGCCCTTAAAGAGACGCGTAAGGGAGATCTACAGGCACTT 903
Query 998 TGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCATCTCAGAGAAT 1057
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 904 TGATCGCCATGCCCTTGAACTACTTGAGAAAATGTTGGTACTTGACCCAGCCCAGAGAAT 963
Query 1058 ATGC-GCAAAGGATGCTCTTGATGCTGAGTACTTTTGGACTGATCCGCTGCCATGTGATC 1116
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AT-CTGCAAAGGATGCACTTGATGCTGAGTACTTTTGGACTGATCCGCTGCCATGTGATC 1022
Query 1117 CAAAGAGTCTACCGACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAACGGCAAC 1176
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1023 CAAAGAGTCTACCGACATATGAATCATCACATGAGTTCCAGACAAAGAAAAAGCGGCAAC 1082
Query 1177 AGATGCGTCATAATGAGGAAGCAGCCAAAAAACAGAAACTGCAGCATCCACAGCAGCAAC 1236
||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1083 AGATGCGCCATAACGAGGAAGCAGCCAAAAAACAGAAACTGCAGCATCCACCGCAGCAAC 1142
Query 1237 ATTCTCGTTTACCTCCACAGCAACACGGTGTTGGCCAGTCTCATGCCGCTCCACTTTGGC 1296
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1143 ATTCTCGTTTACCTCCACAGCAACACGGTGTTGGTCAGTCTCATGCCGCTCCACATTGGC 1202
Query 1297 CTGCTGGACCAAACCACCCTATGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG 1356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CTGCTGGTCCAAACCACCCTATGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG 1262
Query 1357 G-CC--------ATTACTATGGAGGAAAGCCCCGTGGTGGTGCACCTGTTCCAAACCGGT 1407
| || ||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 1263 GACCTGGCGGCCATTACTATGGA--AA-GCCCCGTGGTGGTGCACCTGGTCAAAACCGGT 1319
Query 1408 ACCCTCCTAGCGGAAACCAGACTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCA 1467
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACCCTCCTAGCGGGAACCAGCCTGGTGGTTATAATAATCAGAGCCGTGGAGGTTACAGCA 1379
Query 1468 GCGGAGCATATCCTCCACAAGGTCGTGGTGCACCATATGGCGCCGGTCCTAGAGGACCTA 1527
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1380 GCGGATCATATCCTCCACAAGGTCGAGGTGCACCATATGCCGCCGGTCCTAGAGGACCTA 1439
Query 1528 GCGGTGGCTATGGTGTTGGACCACCCAACTACTCACAAGGTGGTGGTCAGTATGGTGGAT 1587
|||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 1440 GCGGTGGCTATGGTGTTGGACCGCCTAACTACTCCCAAGGTGGTGGTCAGTACGGTGGAT 1499
Query 1588 CTGGTGGCTCTGGAAGAGGTCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGAT 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 CTGGTGGCTCTGGAAGAGGTCAGAACCCTATGGGTGGTGCTAGAAACCAACAATATGGAT 1559
Query 1648 GGCAACCGTAAAGAGAACTCAAAGAGACTC 1677
|||| ||||||||||||||||||| |||
Sbjct 1560 GGCA---GTAAAGAGAACTCAAAGAGTCTC 1586
> Ahg487853 jgi|Araly1|487853|fgenesh2_kg.6__987__AT5G10270.1
Length=1675
Score = 1600 bits (866), Expect = 0.0
Identities = 1302/1507 (86%), Gaps = 52/1507 (3%)
Strand=Plus/Plus
Query 129 GCTTTTGGGCAGTTAAATCTAGAGGAGCCTCCACCGATTTGGGGATCTCGTAGTGTCGAT 188
||||| |||||| |||| || ||||| ||||| ||||| ||||||||||| || || |||
Sbjct 73 GCTTTCGGGCAGCTAAACCTCGAGGAACCTCCTCCGATCTGGGGATCTCGCAGCGTTGAT 132
Query 189 TGCTTCGAGAAGCTTGAACAGATTGGTGAAGGAACTTACGGCCAAGTGTACATGGCTAAA 248
|| || |||||||| ||||| || |||||||| |||||||| ||||| ||||||||||||
Sbjct 133 TGTTTTGAGAAGCTCGAACAAATCGGTGAAGGCACTTACGGTCAAGTTTACATGGCTAAA 192
Query 249 GAAATTAAAACTGGTGAAATCGTGGCTCTGAAAAAGATCCGTATGGACAATGAAAGAGAA 308
||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 193 GAAATCAAAACTGGTGAAATTGTGGCTCTCAAAAAGATTCGTATGGACAATGAAAGAGAA 252
Query 309 GGGTTTCCGATAACCGCTATCCGGGAGATCAAA-ATTCTGAAGAAGCTGCATCATGAAAA 367
|||||||| ||||| |||||| ||||||| ||| || || |||||||| |||||||||||
Sbjct 253 GGGTTTCCTATAACAGCTATCAGGGAGAT-AAAGATCCTAAAGAAGCTTCATCATGAAAA 311
Query 368 TGTCATCCATTTGAAAGAGATTGTTACTTCTCCAGGTCGAGATAGGGATGATCAAGGAAA 427
|||||| || ||||||||||||| ||||| |||||||| || |||||||| ||||||||
Sbjct 312 TGTCATTCAGCTGAAAGAGATTGTGACTTCACCAGGTCGGGACAGGGATGACCAAGGAAA 371
Query 428 GCCAGATAATAACAAATACAAGGGTGGAATCTACATGGTCTTTGAGTACATGGATCATGA 487
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 372 GCCAGATAATAACAAATACAAGGGTGGCATCTACATGGTTTTTGAGTACATGGATCATGA 431
Query 488 CTTGACTGGACTTGCTGATCGTCCTGGACTGAGATTTACGGTTCCTCAGATAAAGTGTTA 547
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 432 TTTGACTGGACTAGCTGATCGTCCTGGACTGAGATTTACTGTTCCTCAAATTAAGTGTTA 491
Query 548 CATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGA 607
|||||||||| |||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 492 CATGAAGCAATTGCTCACCGGGCTTCACTATTGTCATGTGAATCAAGTTCTTCACCGTGA 551
Query 608 TATAAAAGGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTGG 667
||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 552 TATAAAAGGCTCAAATCTCCTTATTGACAATGAGGGAAATTTAAAGCTGGCTGATTTTGG 611
Query 668 GCTTGCTCGGTCATATTCTCATGATCATACTGGAAACCTCACAAATCGTGTCATCACTTT 727
|||||| || || | ||||||||||||| |||| || || ||||||||||||||||| ||
Sbjct 612 GCTTGCACGATCGTTTTCTCATGATCATTCTGGGAATCTTACAAATCGTGTCATCACATT 671
Query 728 GTGGTATAGGCCCCCTGAATTGTTACTTGGTGCAACTAAATATGGACCAGCGATTGACAT 787
||||||||||||||||||||| |||| || || || |||||||| ||||| ||||||||
Sbjct 672 GTGGTATAGGCCCCCTGAATTACTACTCGGGGCTACAAAATATGGCCCAGCAATTGACAT 731
Query 788 GTGGTCAGTTGGATGCATATTTGCTGAACTTTTGA-ATGGAAAACCAATCTTGCCTGGGA 846
|||||||||||| ||||||||||| |||||||| | ||| ||||||||| ||||||||||
Sbjct 732 GTGGTCAGTTGGTTGCATATTTGCCGAACTTTT-ACATGCAAAACCAATTTTGCCTGGGA 790
Query 847 AAACTGAG-AATGAACAATTGAATAAGAT-TTATGAGCTTTGTGGATCACCTGATGAAAG 904
||| |||| || ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 791 AAAATGAGCAA-GAACAATTGAACAAGATATT-TGAGCTTTGTGGATCACCTGATGAAAA 848
Query 905 CAACTGGCCTGGAGTTTCCAAGATGCCTTGGTATAACCAAATGAAATCAT-CTCGGCCCT 963
|| ||||| || |||||||||||||||||||| || ||| | || | | | |||||||
Sbjct 849 CATTTGGCCCGGGGTTTCCAAGATGCCTTGGTACAA-CAATTTCAAGCCTGCACGGCCCT 907
Query 964 TAAAGAGACGCGTAAGGGAGATCTACAGACACTTTGATCGCCATGCCCTTGAACTACTTG 1023
||||||| || ||||| ||| ||| ||||||||||||||| ||||| |||||| |||| |
Sbjct 908 TAAAGAGGCGTGTAAGAGAGTTCTTCAGACACTTTGATCGGCATGCTCTTGAATTACTGG 967
Query 1024 AGAAAATGTTGGTACTTGACCCATCTCAGAGAATATGC-GCAAAGGATGCTCTTGATGCT 1082
||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||
Sbjct 968 AGAAAATGTTGGTGCTTGATCCATCACAGAGAATAT-CGGCAAAGGATGCTCTTGATGCC 1026
Query 1083 GAGTACTTTTGGACTGATCCGCTGCCATGTGATCCAAAGAGTCTACCGACATATGAATCA 1142
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1027 GAATACTTTTGGACTGATCCGCTGCCATGTGACCCAAAGAGTCTGCCTACATATGAATCA 1086
Query 1143 TCACATGAGTTCCAGACAAAGAAAAAACGGCAACAG-ATGCGTCATAATGAGGAAGCAGC 1201
|||||||||||||||||||||||||| ||||||||| | ||| || ||||||||||||||
Sbjct 1087 TCACATGAGTTCCAGACAAAGAAAAAGCGGCAACAGCA-GCGCCAAAATGAGGAAGCAGC 1145
Query 1202 CAAAAA-ACAGAAACTGCAGCATCCACAGCAGCAACATTCTCGTTTACCTCCAC-AGCAA 1259
||||| ||||||| |||||||||||| |||||| || ||||| ||||| ||| | |||
Sbjct 1146 -AAAAAGACAGAAAGTGCAGCATCCACCGCAGCAGCACTCTCGCTTACCCCCATTA-CAA 1203
Query 1260 CACGGTGTTGGCCAGTCTCATGCCGCTCCACTTTGGCCTGCTGGACCAAACCA-CCCTA- 1317
|| |||| | | |||||||||| ||||||| |||||||||||| |||||||| ||| |
Sbjct 1204 CATGGTG--GAC-AGTCTCATGCTGCTCCACATTGGCCTGCTGGTCCAAACCATCCC-AC 1259
Query 1318 TGAACAACAACGCACCACCACCCCAAATACCTGCTGGTG---GCCATTACTATGGA-GGA 1373
| |||||| |||||||||| || |||||||||| |||| ||| | | ||
Sbjct 1260 T-AACAAC---GCACCACCAC---AAGTACCTGCTGGACCCAGCCACCACT-TCTATGGG 1311
Query 1374 AAGCCCCGTGGTGGTGCACCTGTTCCAAACCGGTACCCTCCTAGCGGAAACCAGA-CTGG 1432
||||| |||||| |||||| ||||||||| |||||||||||||||||||||| | ||
Sbjct 1312 AAGCCGCGTGGTC---CACCTGGTCCAAACCGCTACCCTCCTAGCGGAAACCAGAGCGGG 1368
Query 1433 TGGTTATAATAATCAGAGCCGTGGAGGTTACAGCAGCGGAGCATATCCTCCACAAGGTCG 1492
||||||||| | | || || |||||||||||||| ||| |||||||||||||||| ||
Sbjct 1369 -GGTTATAATCA--A-AGTCGAGGAGGTTACAGCAGTGGATCATATCCTCCACAAGGACG 1424
Query 1493 TGGTGCACCATATG-GCGCCGGTCCTAGAGGACCTAGCGGTGGC---TATGGTGTTGGAC 1548
|| || || |||| | || ||||||||||| ||||| |||||| || || |||||||
Sbjct 1425 GGGAGCTCCTTATGTG-GCTGGTCCTAGAGGGCCTAGTGGTGGCGCGTACGGGGTTGGAC 1483
Query 1549 CACCCAACTACTCACAAGGTGGTGGTCAGTATGGTGGATCTGGTGGCTCTGGAAGAGGTC 1608
|||| |||||| |||||||||| ||||||||||| |||||| ||||||||||||| |
Sbjct 1484 CACCTAACTACACACAAGGTGGC---CAGTATGGTGGCTCTGGTAGCTCTGGAAGAGGGC 1540
Query 1609 AGAACCC 1615
|||||||
Sbjct 1541 AGAACCC 1547
> Ahg951337 jgi|Araly1|951337|scaffold_803224.1
Length=1324
Score = 163 bits (88), Expect = 4e-39
Identities = 111/121 (92%), Gaps = 6/121 (5%)
Strand=Plus/Minus
Query 2018 TTTCTCATTGC-TTATTGTCTTATGCGGATGATTCTACTTTCAGAACAACTTTCATGAAC 2076
|||||||| || || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1324 TTTCTCATAGCTTTCCTGTCTTATGC---TGATTCTACTTTCAGAACAACTTTCATGAAC 1268
Query 2077 TCGTAAACAAAGTAACTGATTGCCGCGGAAGGCAAAACCTGCAATA--CTGGGAATCAAG 2134
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1267 TCGTAAACAAAGTAACTGATCGCCGCGGAAGGCAAAACCTGCAATAAGCTGGGAATCAAG 1208
Query 2135 C 2135
|
Sbjct 1207 C 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80332326705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5