BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64970.1
Length=2269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951337 jgi|Araly1|951337|scaffold_803224.1 2122 0.0
Ahg951336 jgi|Araly1|951336|scaffold_803223.1 616 3e-175
> Ahg951337 jgi|Araly1|951337|scaffold_803224.1
Length=1324
Score = 2122 bits (1149), Expect = 0.0
Identities = 1272/1331 (96%), Gaps = 9/1331 (1%)
Strand=Plus/Plus
Query 179 TTTGCCATCGAAAATTTAGTAAAATGCGTGGCCTTGATCGATGGATAGCTGAAGCAATCA 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGCCATCGAAAACCCAGTAAAATGCGTGGCCTTGATCGATGGATAGCTGAAGCAATCA 60
Query 239 GATCAGAGTCATTAGATCACAATGGTCAAATCATCTGCGGTGGGTTGTTTCTCGAAGAAT 298
||||||||||||| |||||||||||||||||| || |||||| ||||||||||| ||||
Sbjct 61 GATCAGAGTCATTGGATCACAATGGTCAAATC--CT-CGGTGGATTGTTTCTCGACGAAT 117
Query 299 CTCTTCCTTCCTCGTCTGTCTCTTTTCTTTCGTCGAAGGATTGTTCCGTCAATTCGTGTC 358
|| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 118 CTGTTCCTTCCTCGTCTGTCTCTTTTCTTTCCTCTAAGGATTGTTCCGTCAGTTCGTGTC 177
Query 359 GCTTCAGTCAAAAGTCGAGTTTTTTGAAGTTTAGGAGACGAAACGGGACCAGGGAACCTC 418
| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 178 GTTTCAGTCAAAAGTCGAGATTTTTGAAGTTTAGGAGACGAAATGGGACCAGGGAACCCC 237
Query 419 TGTTTCTGTCTGTTAGTTTATCGATTAACGAGAGTAATGGTGAGGAAGAAGAAGGTGAAG 478
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 238 TGTTTCTGTCTGTTAGTTTATCGATTAAGGAGGGTAATGGTGAGGAAGAAGAAGGTGAAG 297
Query 479 GGTATAATGGTCAAAACGGCTTTAAATCGGAGAAAGGTTCGGTGTTGATCGGTGG-TGGT 537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 298 GGTATAATGGTCAAAACGGCTTTAAATCGGAGAAAGGTTCGGTGTTGATTGGTGGAT-GT 356
Query 538 CAAGAATCTAAGGAGAAGCGTAGGGTTAAGGAAAATGGAGCAGGAGCTCTCAACACAACC 597
|||||| | |||||||||| || ||||||||||| |||| ||||||||||||||||||||
Sbjct 357 CAAGAAGCCAAGGAGAAGCTTATGGTTAAGGAAACTGGAACAGGAGCTCTCAACACAACC 416
Query 598 AAGCATTTATGGGCTGGAGCTTTTGCAGCCATGGTTTCAAGAACTTGCATTGCACCTCTT 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 417 AAGCATTTATGGGCTGGAGCTTTTGCTGCCATGGTTTCAAGAACTTGCATTGCACCTCTT 476
Query 658 GAACGGATGAAGCTAGAATACATTGTTCGCGGAGAGCAAGGGAATCTTCTTGAACTCATT 717
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GAGCGGATGAAGCTAGAATACATTGTTCGTGGAGAGCAAGGGAATCTTCTTGAACTCATT 536
Query 718 CAGAGGATTGCAACAAATGAAGGGATTAGAGGATTTTGGAAAGGGAATTTGGTTAATATT 777
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 CAGAGGATTGCAACAACTGAAGGGATTAGAGGCTTTTGGAAAGGGAATTTGGTTAATATT 596
Query 778 CTCAGAACTGCTCCCTTTAAGTCCATCAACTTCTATGCATATGATACATATAGAGGTCAG 837
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 CTCAGAACTGCTCCTTTTAAGTCCATCAACTTCTATGCATATGATACATATAGAGGCCAG 656
Query 838 CTTCTGAAATTGTCCGGGAATGAAGAAACGACAAATTTCGAGAGGTTTGTTGCTGGTGCA 897
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 657 CTTCTGAAATTATCCGGGAACGAAGAAACTACAAATTTCGAGAGGTTTGTTGCTGGTGCA 716
Query 898 GCTGCCGGAGTAACAGCTAGTTTGCTTTGTCTACCACTTGATACTATAAGAACGGTTATG 957
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 717 GCTGCCGGAGTAACAGCTAGTTTACTTTGTCTACCACTTGATACCATAAGAACGGTTATG 776
Query 958 GTGGCACCCGGTGGAGAAGCATTAGGTGGTGTAGTTGGTGCATTCCGTCACATGATTCAA 1017
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTGGCACCTGGGGGAGAGGCATTAGGTGGTGTAGTTGGTGCATTCCGTCACATGATTCAA 836
Query 1018 ACTGAAGGTTTCTTTTCCCTATACAAAGGTCTTGTACCTTCACTTGTTAGTATGGCTCCA 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACCGAAGGTTTCTTTTCCCTATACAAAGGTCTTGTACCTTCACTTGTTAGTATGGCTCCA 896
Query 1078 TCGGGAGCTGTGTTCTACGGTGTCTATGATATTTTAAAATCAGCTTACCTTCATACACCG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCGGGAGCTGTGTTCTACGGTGTCTATGATATTTTAAAATCAGCTTACCTTCATACACCG 956
Query 1138 GAAGGTAAGAAACGGCTTGAACACATGAAGCAAGAAGGTGAAGAACTTAATGCTTTCGAT 1197
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 957 GAAGGTAAGAAACGGCTTGAACACATGAAACAAGAAGGTGAAGAACTTAACGCTTTCGAT 1016
Query 1198 CAACTCGAGCTTGGTCCCATGAGAACTTTGTTATATGGAGCAATCGCAGGGGCTTGCTCA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAACTCGAGCTTGGTCCCATGAGAACTTTGTTATATGGAGCAATCGCAGGGGCTTGCTCA 1076
Query 1258 GAAGCAGCAACATATCCGTTTGAAGTTGTGAGAAGGCGTTTACAAATGCAGTCACATGCT 1317
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAAGCAGCGACTTATCCGTTTGAAGTTGTGAGAAGGCGTTTACAAATGCAGTCACATGCG 1136
Query 1318 AAAAGGTTAAGCGCAGTGGCTACTTGTGTGAAGATCATTGAACAAGGAGGTGTTCCTGCT 1377
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAAAAGTTAAGCGCTGTGGCTACTTGTGTGAAGATCATTGAACAAGGAGGTGTTCCTGCT 1196
Query 1378 CTATATGCTGGCTTGATTCCCAGCTTATTGCAGGTTTTGCCTTCCGCGGCAATCAGTTAC 1437
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1197 CTATATGCTGGCTTGATTCCCAGCTTATTGCAGGTTTTGCCTTCCGCGGCGATCAGTTAC 1256
Query 1438 TTTGTTTACGAGTTCATGAAAGTTGTTCTGAAAGTAGAATCATCCGCATAAGACAATAA- 1496
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1257 TTTGTTTACGAGTTCATGAAAGTTGTTCTGAAAGTAGAATCA---GCATAAGACAGGAAA 1313
Query 1497 GCAATGAGAAA 1507
|| ||||||||
Sbjct 1314 GCTATGAGAAA 1324
> Ahg951336 jgi|Araly1|951336|scaffold_803223.1
Length=1587
Score = 616 bits (333), Expect = 3e-175
Identities = 401/431 (93%), Gaps = 15/431 (3%)
Strand=Plus/Minus
Query 1848 GAGTCTCTTTGAGTTCTCTTTACGGTTGCCATCCATATTGTTGGTTTCTAGCACCACCCA 1907
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1586 GAGACTCTTTGAGTTCTCTTTAC---TGCCATCCATATTGTTGGTTTCTAGCACCACCCA 1530
Query 1908 TAGGGTTCTGACCTCTTCCAGAGCCACCAGATCCACCATACTGACCACCACCTTGTGAGT 1967
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1529 TAGGGTTCTGACCTCTTCCAGAGCCACCAGATCCACCGTACTGACCACCACCTTGGGAGT 1470
Query 1968 AGTTGGGTGGTCCAACACCATAGCCACCGCTAGGTCCTCTAGGACCGGCGCCATATGGTG 2027
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1469 AGTTAGGCGGTCCAACACCATAGCCACCGCTAGGTCCTCTAGGACCGGCGGCATATGGTG 1410
Query 2028 CACCACGACCTTGTGGAGGATATGCTCCGCTGCTGTAACCTCCACGGCTCTGATTATTAT 2087
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1409 CACCTCGACCTTGTGGAGGATATGATCCGCTGCTGTAACCTCCACGGCTCTGATTATTAT 1350
Query 2088 AACCACCAGTCTGGTTTCCGCTAGGAGGGTACCGGTTTGGAACAGGTGCACCACCACGGG 2147
||||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1349 AACCACCAGGCTGGTTCCCGCTAGGAGGGTACCGGTTTTGACCAGGTGCACCACCACGGG 1290
Query 2148 GCTTTCCTCCATAGTAATGGCC---A---CCA---GCAGGTATTTGGGGTGGTGGTGCGT 2198
||||||| |||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1289 GCTTTCC---ATAGTAATGGCCGCCAGGTCCACCAGCAGGTATTTGGGGTGGTGGTGCGT 1233
Query 2199 TGTTGTTCATAGGGTGGTTTGGTCCAGCAGGCCAAAGTGGAGCGGCATGAGACTGGCCAA 2258
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 1232 TGTTGTTCATAGGGTGGTTTGGACCAGCAGGCCAATGTGGAGCGGCATGAGACTGACCAA 1173
Query 2259 CACCGTGTTGC 2269
|||||||||||
Sbjct 1172 CACCGTGTTGC 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85436419535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5