BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64980.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496718 jgi|Araly1|496718|fgenesh2_kg.8__2534__AT5G64980.1 1543 0.0
> Ahg496718 jgi|Araly1|496718|fgenesh2_kg.8__2534__AT5G64980.1
Length=1129
Score = 1543 bits (835), Expect = 0.0
Identities = 1043/1140 (91%), Gaps = 28/1140 (2%)
Strand=Plus/Plus
Query 47 ATTTCCAGTGATGGGTTTTAGATCGGTTTATCAATCTCTCACGGAGTTATTTCCACAGAT 106
|||||| ||||||||||| |||||||| |||||||||||| | |||||||||||||||||
Sbjct 4 ATTTCCGGTGATGGGTTTCAGATCGGTGTATCAATCTCTCGCCGAGTTATTTCCACAGAT 63
Query 107 TGATCCAAAGATTCTAAGAGGTGTTGCAATTGAGCACCAACATGATGCTGATGAAGCTGC 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TGATCCAAAGATTCTAAGAGGTGTTGCAATTGAGCACCAACATGATGCTGATGAAGCTGC 123
Query 167 CTCTGTTGTTATCTCTGAGATTTTCCCTTTCTCTTCCCCAAATTCCACTCAACCTCACAA 226
||| ||||||| ||||||||||| |||||||||||||| |||||||||||||| | |||
Sbjct 124 TTCTCTTGTTATTTCTGAGATTTTTCCTTTCTCTTCCCCTAATTCCACTCAACCCCGCAA 183
Query 227 CAAGAACAAGACCAAGGTTTCCGACAATCCCCCTAACTTGAAAGTAAAATGTGACGATGG 286
|||||||||||||||| | || || ||||||||||||||||||||| || ||||||||||
Sbjct 184 CAAGAACAAGACCAAGATCTCTGATAATCCCCCTAACTTGAAAGTAGAAGGTGACGATGG 243
Query 287 GAGTTTGTCTCTGTCTCAATGGCTTCAACCATCTAAGCTTCCACATAGTTACCTTGCTTT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GAGTTTGTCTCTGTCTCAATGGCTTCAACCATCTAAGCTTCCACATAGTTACCTTGCTTT 303
Query 347 GCTCAACGAAGATTCTACACCTGATGTTAAACCTCCTCTCGATTACGTCGTGGAGAAAGT 406
|||||||||||| |||||||||||||| |||||||||| ||||||||| || ||||||||
Sbjct 304 GCTCAACGAAGAATCTACACCTGATGTCAAACCTCCTCCCGATTACGTTGTTGAGAAAGT 363
Query 407 TGTTCTGCCAAGTCGTGGCCCTGCAACTGGTCTAGGAGGAGGGATCCGAACCATGTACTC 466
|||||||| ||||||||| ||||| ||||| |||||||||| |||||||||||||||||
Sbjct 364 GGTTCTGCCTAGTCGTGGCTCTGCAGCTGGTGTAGGAGGAGGAATCCGAACCATGTACTC 423
Query 467 TTCTGACAACATTGGTGGTTCTTCCTTGGTGAAACCCTCTATTCGTGTACAAAGCCGCAC 526
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 424 TTCTGACAACATTGGTGGTTCTTCCGTGGTGAAACCTTCTATTCGTGTACAAAGCCGCAC 483
Query 527 CAACAATGAACTCTCTGGAAGCAGCAGTAAGGTTCCTG-GACGTAGACGATCCTCTCGCA 585
|||||||||||||||||||||||||||||||| || || | |||||||||||||| |||
Sbjct 484 CAACAATGAACTCTCTGGAAGCAGCAGTAAGGCTCATGTGG-GTAGACGATCCTCTTGCA 542
Query 586 AGTCTGTGCAGCCTTGGTCCCCAGACTACTCTGAGAAGCTTAGAAGTTGGAAAAAACGGA 645
|||||| |||||| |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 543 AGTCTGAGCAGCCATGGTCCCCAGACTACTCTCAGAAGCTGAGAAGTTGGAAAAAACGGA 602
Query 646 GCAACAACAACAACCGTGACTTCTCACAGCTCTTTGACAATGACATAGATGTACCCTCGA 705
| ||||||| | ||||||||||||||| ||||| |||| ||| ||||||||||||||
Sbjct 603 --A-CAACAAC--C-GTGACTTCTCACAGCACTTTGGCAATTACAGAGATGTACCCTCGA 656
Query 706 CACGA--TCCAACAAATGTTATACCAATGAGCGTGAGCGCAAGCAGAGAATTGCCGATAA 763
| || ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 657 -A-GAAATCCAACAGATGTTATACCAATGAGCGTGAGCGCAGGCAGAGAATTGACGATAA 714
Query 764 CATCAAGGCATTAGGGAAATTGCTCCCACATAAAGTTGAGGGGGATAACCATGAATTGAC 823
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 715 CATCAAGGCATTAGGGAAATTGCTCCCACATAAAGTTGAGGAGGATAACCCTGAATTGAC 774
Query 824 ACTGAATGCCATGGTTGATCATGTTAAGCTTCTGCATCTACAGATGAAGGAATTAAGTCG 883
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 775 ACTGAATGCCATTGTTGATCATGTTAAGCTTCTTCAGCTACAGATGAAGGAATTAAGTCG 834
Query 884 AAGCAGGTTGGGAGGAGAACCAATATCTCATCCTATGGCATTCATTGAGGGATACGGTCA 943
||||||| |||||| | | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 835 AAGCAGGCTGGGAG-A-A-CTAATATCTCATCCTATGACATTCATTGAGGGATACGGTCA 891
Query 944 CTACATACATCACGAGCAGACGATGGCAAAATCTCTGGAGGAAGTAATGGAAGATCTGCT 1003
|||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||
Sbjct 892 CTACATACATCACGAGCAGACGGTGACAAAATCTCTAGAGGAAGTAATGGAAGATATGCT 951
Query 1004 TACAAAGGACTTTGATGCTGCGGCTAACTTGTTGGAGAGCAAAGGCCTTTACTTAACGCC 1063
|||||| ||||| |||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 952 TACAAATGACTTGGATGCTGCGGCTAACTTGTTGGAGAGCAAAGGACTATACTTAATGCC 1011
Query 1064 TTTGTCCTCTGTCCAAGGCTCCTGCTGAC---TCCTCT-C-A--C---AA-TCTCAAACA 1112
|||||||||||||||||||||||||||| |||||| | | | || |||||||||
Sbjct 1012 TTTGTCCTCTGTCCAAGGCTCCTGCTGATGAGTCCTCTTCTAATCTGCAAATCTCAAACA 1071
Query 1113 CATGGAATCAAAAACAAAGTaaaaaaaaaCTTTTGACCACTCTTCTGTTTAGTATAACAA 1172
|||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||
Sbjct 1072 CATGGAATCAAAAACAAAGTAAAAAAC--CTTTACACCAATCTTATGTTTAGTATAACAA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5