BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64990.2
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496719 jgi|Araly1|496719|fgenesh2_kg.8__2535__AT5G64990.1 900 0.0
Ahg487852 jgi|Araly1|487852|fgenesh2_kg.6__986__AT5G10260.1 409 2e-113
> Ahg496719 jgi|Araly1|496719|fgenesh2_kg.8__2535__AT5G64990.1
Length=621
Score = 900 bits (487), Expect = 0.0
Identities = 595/643 (93%), Gaps = 23/643 (4%)
Strand=Plus/Plus
Query 47 ATGGGAGATTTAGGAAAAGGG-TACAAGCTAGTGTTCTTGGGGGATCAAGGCGTAGGGAA 105
|||||||||||||| ||||| ||||||||||||||| |||| ||||||||||| || ||
Sbjct 1 ATGGGAGATTTAGG-GAAGGGATACAAGCTAGTGTTCCTGGGCGATCAAGGCGTTGGCAA 59
Query 106 AACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGGCAACAAT 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 AACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGGCTACAAT 119
Query 166 TGGAATAGACTTTTTGTCAAAAACAACGCGGTATGAAGATAGGACTTTTCGTCTGCAATT 225
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 120 TGGAATAGACTTTTTGTCCAAAACAATGCGCTATGAAGATAGGACTTTTCGTCTGCAA-- 177
Query 226 GTGGTACAAAAAACTGTCCCTTGGGGATACTGCAGGACAAGAGAGATTTAAAAGCCTAGT 285
| || | ||||||| |||||||||||||||||||||||||||||
Sbjct 178 ----T---------TG-----T-GGGATACAGCAGGACAAGAGAGATTTAAAAGCCTAGT 218
Query 286 ACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCA 278
Query 346 ATCATTTATAAACACCTCCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCTATGT 405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 279 ATCATTTTTAAACACCTCCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCCATGT 338
Query 406 CATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATAAAAGGCAAGTTTCGATAGA 465
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 339 CATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATAAACGGCAAGTTTCAATAGA 398
Query 466 GGAAGGGGAGAATAAAGCTCGTGAGTTTGGAGCTTTGTTCATGGAGACTAGTGCTAAAGC 525
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 GGAAGGGGATAATAAAGCTCGTGAGTTTGGAGCTTTGTTCATGGAGACTAGTGCAAAAGC 458
Query 526 TGGATTCAACATTAAGCCTTTGTTCTGTAAGATTACATCGGCGTTACAAGGAAACGAGGC 585
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 459 TGGATTCAACATTAAGCCTTTGTTCTGTAAGATCACGTCTGCGTTACAAGGAAACGAGGC 518
Query 586 AGTTTCTTGGACGAAACAAGAGGATTTGGTGGATGTGAATCTAAAGCCACTCATGTTTTC 645
||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 519 AGTTTCTTGGACGAAACAAGAGGATTTAGTGGATGTGAATCTAAAGCCATTGATCATTTC 578
Query 646 ATCTCAGGCAAATCATCAACAAGAAAGCAATTGTTCTTGTTAA 688
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 ATCTCAGGCAGATCATCAACAAGAAAGCAATTGTTCTTGTTAA 621
> Ahg487852 jgi|Araly1|487852|fgenesh2_kg.6__986__AT5G10260.1
Length=842
Score = 409 bits (221), Expect = 2e-113
Identities = 460/571 (81%), Gaps = 33/571 (6%)
Strand=Plus/Plus
Query 67 GTACAAGCTAGTGTT-CTTGGGGGATCAAGGCGTAGGGAAAACGAGCATCATCACTTGTT 125
||||||||| ||||| ||| || |||||| ||| || || || |||||||||||| |||
Sbjct 27 GTACAAGCTCGTGTTCCTT-GGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTT 85
Query 126 TCATGTACGGTAAATTCGACACCAGTTATCAGGCAACAATTGGAATAGACTTTTTGTCAA 185
||||||||| |||||||| |||| ||||||||||||||||||||| || ||||||||||
Sbjct 86 TCATGTACGACAAATTCGATACCACTTATCAGGCAACAATTGGAATTGATTTTTTGTCAA 145
Query 186 AAACAACG--CGGTATGAAGATAGGACTTTTCGTCTGCAATTGTGGTACAAAAAACTGTC 243
|||||| | | | ||| | ||||||| |||| | | | | | ||| |
Sbjct 146 AAACAATGTAC-CT-TGAGGTTAGGACTGTTCG--T-C-----T-G--C----AAC--T- 185
Query 244 CCTTGGGGATACTGCAGGACAAGAGAGATTTAAAAGCCTAGTACCAAGTTATATCAGAGA 303
| |||| ||||||||||| ||||||||| ||| ||| |||||||||||||| ||||
Sbjct 186 --AT-GGGACACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCCGAGA 242
Query 304 TTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCAATCATT-TATAAACACCT 362
||||||||||||||||||||||||||||||||| | || ||| ||||| | | |||||||
Sbjct 243 TTCTTCTGTTGCTGTTATTGTCTATGATGTTGCAAATAGGCAGTCATTCT-TGAACACCT 301
Query 363 CCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCTATGTCATTATTGTTCTTGTTG 422
|||||||||| || || |||||| |||| ||||| ||| ||||||| |||||||| ||||
Sbjct 302 CCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTG 361
Query 423 GTAACAAAACCGATCTTGTTAATAAAAGGCAAGTTTCGATAGAGGAAGGGGAGAATAAAG 482
|||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||| || ||||
Sbjct 362 GTAACAAAACAGATCTCGTTGACAAAAGGCAAGTGTCGATTGAGGAAGGGGATAACAAAG 421
Query 483 CTCGTGAGTT-TGGAG-CTTTGTTCATGGAGACTAGTGCTAAAGCTGGATTCAACATTAA 540
||||||| || ||||| | | ||||| ||||| ||||| ||||| ||||||||||| ||
Sbjct 422 CTCGTGA-TTATGGAGTCATA-TTCATAGAGACCAGTGCAAAAGCAGGATTCAACATCAA 479
Query 541 GCCTTTGTTCTGTAAGATTACATCGGCGTTACAAGGAAACGAGGCAGTTTCTTGGACGAA 600
||| | ||| | |||||| || | || |||| ||||| || || | |||| |||||
Sbjct 480 GCCACTATTCCGCAAGATTGCAGCAGCATTACCAGGAATGGAAACACTGTCTTCAACGAA 539
Query 601 ACAAGAGGATTTGGTGGATGTGAATCTAAAG 631
|||||||||| |||| |||||||| ||||||
Sbjct 540 ACAAGAGGATATGGTTGATGTGAACCTAAAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5