BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65000.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496721 jgi|Araly1|496721|fgenesh2_kg.8__2537__AT5G65000.1 1777 0.0
> Ahg496721 jgi|Araly1|496721|fgenesh2_kg.8__2537__AT5G65000.1
Length=1172
Score = 1777 bits (962), Expect = 0.0
Identities = 1105/1173 (94%), Gaps = 13/1173 (1%)
Strand=Plus/Plus
Query 56 GATTTTCTGGATTCTCGACGGCCGGAGATTCATGGCGACGGCTAACGGAGCAAAGAGTCC 115
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCTTCTGGATTCTCGGCGGCCGGAGATTCATGGCGACGGCTAACGGAGCAAAGAGTCC 60
Query 116 GTCGAGTATGGGCCCTAAGGTTTTGTTTTATTCCATATTGCTCACACTTCAGTACGGAGC 175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GTCGAGTATGGGCCCTAAGGTTTTGTTTTATTCCATATTGCTTACACTTCAGTACGGAGC 120
Query 176 CCAGCCTCTGATCTCCAAACGCTGCATCAGAAAGGATGTTATTGTAACTTCATCTGTTTT 235
|||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 121 CCAGCCTCTGATCTCCAAACGCTGCATCGGGAAGGACGTTATTGTTACTTCATCTGTTTT 180
Query 236 GACGTGCGAGATTGTTAAGGTCATATGTGCTCTGATTCTCATGGCAAGAAATGGTAGTTT 295
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GACGTGCGAGATTGTTAAGGTCATGTGTGCTCTGATTCTCATGGCAAGAAATGGTAGTTT 240
Query 296 GAAGGGATTAGCAAAAGAGTGGACGTTGATGGGATCCTTGACAGCATCAGGACTTCCTGC 355
|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 GAAGGGATTATCAAAAGAGTGGACGTTGATGGGATCCTTGACTGCATCTGGACTTCCTGC 300
Query 356 AGCCATATATGCACTGCAGAACAGTTTGCTGCAGATCTCATACAGGAGTCTTGATTCCTT 415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGCCATATATGCACTGCAGAACAGTTTGCTGCAGATCTCATACAGGAATCTTGATTCCTT 360
Query 416 GACATTTTCAATTCTGAATCAGACGAAAATCTTTTTCACAGCATTCTTTACTTTCATAAT 475
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 361 GACGTTTTCAATTCTGAATCAGACGAAAATCTTTTTCACAGCATTTTTTACATTCATAAT 420
Query 476 ACTAAGGCAGAAGCAATCAATTCTACAAATAGGAGCCTTGTGTCTATTGATCATGGCAGC 535
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTAAGGCAGAAGCAATCAATTCAACAAATAGGAGCCTTGTGTCTATTGATCATGGCAGC 480
Query 536 AGTCCTTCTAAGTGTTGGTGAAGGCTCTAACAAAGATTCAAGCGGCATTAATGCGGATCA 595
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 481 AGTCCTTCTAAGTGTTGGTGAAGGATCTAACAAAGATTCAAGTGGCATTAATGCGGATCA 540
Query 596 AAAGCTGTTTTATGGAATTATCCCGGTCTTGGCAGCCTCTGTCCTGTCGGGTTTAGCCTC 655
|||||||||| ||||||||||||||||||||| |||||| || || ||||||||||||||
Sbjct 541 AAAGCTGTTTAATGGAATTATCCCGGTCTTGGTAGCCTCAGTGCTCTCGGGTTTAGCCTC 600
Query 656 TTCTCTGTGTCAATGGGCTTCTCAGGTCAAGAAGCATTCATCATACTTAATGACGGTTGA 715
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTCTATGTCAATGGGCTTCTCAGGTCAAGAAGCATTCATCATACTTAATGACGGTTGA 660
Query 716 AATGTCTATCGTTGGAAGCCTCTGTTTATTAGTAAGTACTCTTAAATCTCCAGATGGTGA 775
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 661 AATGTCTATTGTTGGAAGCCTCTGCTTATTAGTAAGTACCCTTAAATCTCCAGATGGTGA 720
Query 776 AGCGATTAAAAAATATGGCTTCTTTCATGGTTGGACTGCTTTAACACTGGTCCCAGTAAT 835
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 721 AGCGATTAAAAGATATGGCTTCTTTCATGGTTGGACAGCTTTAACACTGGTCCCAGTGAT 780
Query 836 AAGCAATGCTCTTGGTGGGATTCTTGTTGGCCTAGTTACATCACATGCCGGTGGTGTAAG 895
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGCAACGCCCTTGGTGGGATTCTTGTTGGCCTAGTTACATCACATGCCGGTGGTGTAAG 840
Query 896 AAAGGGATTTGTGATTGTGTCGGCATTACTTGTGACGGCGCTACTTCAATTTGCGTTTGA 955
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 841 AAAGGGATTTGTGATTGTGTCGGCATTACTTGTGACAGCGCTACTTCAGTTTGCGTTTGA 900
Query 956 AGGAAAACCGCCATCATCGTATTGCCTAGTTGCTCTTCCTCTTGTGATGAGTAGTATCTC 1015
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 901 AGGAAAACCGCCATCATCGTATTGCCTGGTCGCTCTCCCTCTTGTGATGAGTAGTATCTC 960
Query 1016 AATGTACCAGAAATACCCATACATTGACAAGAAGAAGAAGAAGGTGTAAGAAAAAGGTTC 1075
||||||||||||| |||||| |||||||||||||||||||||| |||||| || |||
Sbjct 961 GCTGTACCAGAAATATCCATACCTTGACAAGAAGAAGAAGAAGGTTTAAGAAGAACCTTC 1020
Query 1076 CATTCAGAGAATAGCTGCTAG---TTACAACAATGAGATATCTTAAT----GCCATTATT 1128
|||||| ||||||||||||| || |||||||||||| ||||||| ||||||| |
Sbjct 1021 CATTCACAGAATAGCTGCTAAAAATT-CAACAATGAGATGTCTTAATTAATGCCATTAGT 1079
Query 1129 ATTAACTAAGTAGATGAT-A--GTG--TGATTCTTGGAGCATTCAAAAGACTTTGTAGTA 1183
| ||| ||| |||||||| | ||| |||||||||||||||||||||||| ||||||||
Sbjct 1080 AGTAATTAACTAGATGATGATAGTGAATGATTCTTGGAGCATTCAAAAGACATTGTAGTA 1139
Query 1184 TATTTACATTCAAAGATGGAATGAGTCCAATTG 1216
||||||||||| |||||||||||||||||||||
Sbjct 1140 TATTTACATTCGAAGATGGAATGAGTCCAATTG 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5