BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65020.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496724 jgi|Araly1|496724|fgenesh2_kg.8__2540__AT5G65020.1 1650 0.0
Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 745 0.0
Ahg940493 jgi|Araly1|940493|scaffold_601037.1 741 0.0
> Ahg496724 jgi|Araly1|496724|fgenesh2_kg.8__2540__AT5G65020.1
Length=1175
Score = 1650 bits (893), Expect = 0.0
Identities = 1015/1071 (95%), Gaps = 19/1071 (2%)
Strand=Plus/Plus
Query 1 TTACTTAAGTAGGACGACGTGCGTCTGCTTCG--TCTCATTACAAAGCAGAAGAAACACA 58
||||||||| ||||||||||||||||||| || ||||||||| ||||||||| || ||
Sbjct 1 TTACTTAAGCAGGACGACGTGCGTCTGCTGCGTCTCTCATTAC-AAGCAGAAG-AA-AC- 56
Query 59 AACAGAGGCAGAGATCTTAAGAGTTAAAGACTAATCCCAACAATGGCGTCTCTCAAAGTC 118
| |||| | ||| | | || | | || |||||||||||||||||||||||||
Sbjct 57 -A-AGAGTTAAAGA-C-T--GA--T----CCCAA-CCCAACAATGGCGTCTCTCAAAGTC 103
Query 119 CCAAGCAATGTTCCTCTTCCCGAAGATGACGCCGAGCAACTCCACAAGGCTTTTTCAGGA 178
|||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 104 CCAACCAATGTTCCTCGTCCCGAAGATGACGCTGAGCAACTCCACAAGGCATTTTCAGGA 163
Query 179 TGGGGTACCAACGAGAAGCTGATCATATCAATACTAGCTCACAGGAACGCAGCACAACGC 238
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 164 TGGGGCACCAACGAGAAGCTGATCATATCAATTCTAGCTCACAGGAACGCAGCACAACGC 223
Query 239 AGCTTGATCCGCAGCGTTTATGCAGCTACCTACAATGAGGATCTTCTCAAAGCATTAGAC 298
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 224 AGCTTAATCCGCAGCGTTTATGCCGCTACCTACAATGAGGATCTTCTCAAGGCATTAGAC 283
Query 299 AAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCACCAGAG 358
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 284 AAAGAGCTTTCTAGTGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCAGCAGAG 343
Query 359 AGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTTCACCAAGAACAATTGGGTTCTT 418
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 344 AGAGATGCTTATCTAGCTAAAGAATCCACCAAAATGTTCACCAAGAACAATTGGGTTCTT 403
Query 419 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTATCAAGGTCAAGCAAGCTTACCAA 478
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 404 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTTTCAAGGTCAAGCAAGCTTACCAA 463
Query 479 GCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCAACACACATCTGGTGACCTTCGT 538
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 464 GCTCGATACAAGAAATCACTCGAGGAAGATGTGGCGCAACACACATCTGGTGACCTTCGT 523
Query 539 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 583
Query 599 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAATCTTACAGTGAC 658
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 584 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAAGCTTACAGCGAC 643
Query 659 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGTGCAACACTCAAC 718
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 644 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGCGCAACACTAAAC 703
Query 719 CACTACAACAACGAGTATGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCGGACGAC 778
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 704 CACTACAACAACGAGTACGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCAGACGAC 763
Query 779 AATGACTACATGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 838
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 AATGACTACCTGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 823
Query 839 TTTGAGAAGGTTCTTCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTTGAGAAGGTTCTGCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 883
Query 899 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 943
Query 959 AGAAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGACTATGAGGAC 1018
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 944 AGGAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGATTATGAGGAC 1003
Query 1019 ATGCTTGTTGCTCTTCTCGGACATGGCGATGCTTGAAACTGTTTCAACTTT 1069
|||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1004 ATGCTTGTTGCTCTTCTCGGACATGGTGATGCTTGAAACTGGTTCAATTTT 1054
Score = 182 bits (98), Expect = 7e-45
Identities = 118/127 (93%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1102 TTTTAAATAAAAGAGTTGTGAAACTGG-TTCTGCAACTATTTATCAATGATCGTTT-GAG 1159
|||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1051 TTTTGAATAAGAGAGTTGTGAAACTGGTTTCTGCAACTATTTATCAATGATCGTTTTGAG 1110
Query 1160 TTTGTTAAATTTGAATCAAAATCTGTTTTTCTTTCTTTTAAATACAATCTAAAGCACAAA 1219
|||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1111 TTTGTTAA-TTTGAATCAAAATCTGTTTTCCTTTCTTT-AAATGCAATCTAAAGCACAAG 1168
Query 1220 CTAAAGC 1226
|||||||
Sbjct 1169 CTAAAGC 1175
> Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824
Length=957
Score = 745 bits (403), Expect = 0.0
Identities = 786/970 (81%), Gaps = 29/970 (3%)
Strand=Plus/Plus
Query 101 ATGGCGTCTCTCAAAGTCCCAAGCAA-TGTTCCTCTTCCCGAAGATGACGCCGAGCAACT 159
||||||||||||||| | || |||| | |||||||||||||||| ||| ||||||| ||
Sbjct 1 ATGGCGTCTCTCAAAATTCC-TGCAACTATTCCTCTTCCCGAAGAAGACTCCGAGCAGCT 59
Query 160 CCACAAGGCTTTTTCAGGATGGGGTACCAACG-AGAAGCTGATCATATCAATAC-TAGCT 217
| ||||||| ||| ||||||||| || || | || | ||||||||||||| | | |||
Sbjct 60 CTACAAGGCCTTTAAAGGATGGGGAACTAATGAAG-GGATGATCATATCAAT-CTTGGCT 117
Query 218 CACAGGAACGCAGCACAACGCAGCTTGATCCGCAGC-GTTTATGCAGCTACCTACAATGA 276
||||| |||||||| || |||||||| |||||| || |||||||| |||| ||||||| |
Sbjct 118 CACAGAAACGCAGCGCAGCGCAGCTTCATCCGC-GCTGTTTATGCTGCTAACTACAATAA 176
Query 277 GGATCTTCTCAAAGCATTAGACAAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTT 336
|||||||||||| | |||||||| |||| |||| | |||||||||||||||||||||||
Sbjct 177 GGATCTTCTCAAGGAATTAGACAGAGAGTTTTCCGGTGACTTTGAGAGAGCTGTGATGTT 236
Query 337 GTGGACTCTTGATCCACCAGAGAGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTT 396
|||||||||||||||| | ||||| ||||| |||||||| || ||||| ||||| |||||
Sbjct 237 GTGGACTCTTGATCCAACGGAGAGGGATGCGTATTTGGCCAATGAATCTACCAAAATGTT 296
Query 397 CACCAAGAACAATTGGGTTCTTGTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTAT 456
|||||| |||| ||||||||| |||||||||||||| || || ||| |||||||| || |
Sbjct 297 CACCAAAAACATTTGGGTTCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTTTTT 356
Query 457 CAAGGTCAAGCAAGCTTACCAAGCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCA 516
||||| ||||||||| ||||| ||||| ||||||| || ||||||| |||||||| |
Sbjct 357 CAAGGCCAAGCAAGCATACCATGCTCGCTACAAGACCTCTCTCGAGGAGGATGTCGCATA 416
Query 517 ACACACATCTGGTGACCTTCGTAAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGT---A 573
||||||||||| || |||| ||||| ||| |||||||||||||||| ||||||| |
Sbjct 417 CCACACATCTGGAGATGTTCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGA 476
Query 574 T-G-AA-GGAGATGATGTGAACATGATGCTTGCAAGATCTGAAGCTAAGATACTTCACGA 630
| | || | ||||| || ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 477 TGGAAACGCTGATGAGGTCAACATGATGCTTGCAAGATCTGAAGCTAAGACACTTCACAA 536
Query 631 GAAGGTCTCAGAGAAATCTTACAGTGACGATGA-CTTCATCAGAATCTTGACAACAAGAA 689
|||| | | ||||| |||||| ||| || || || ||||||||||||||||||||| |
Sbjct 537 GAAGATAACTGAGAAGGCTTACACTGATGAAGATCT-CATCAGAATCTTGACAACAAGGA 595
Query 690 GCAAAGCACAGCTCGGTGCAACACTCAACCACTACAACAACGAGTATGGAAACGCCATTA 749
||||||| ||| || ||||||| ||||| |||| ||| | ||| ||||| ||||||
Sbjct 596 GCAAAGCTCAGATCAGTGCAACGCTCAATCACTTCAAGGATAAGTTTGGAAGTTCCATTA 655
Query 750 ACAAGAA-CTTGAAGGAAGAGTCGGACGACAATGACTACATGAAACTACT-AAGAGCTGT 807
||||| || ||||||||| || |||| ||| || | || |||| || | | |
Sbjct 656 ACAAGTTTCT-GAAGGAAGATTCCAACGA---TGATTATGTTCAATTACTCAAAACC-GC 710
Query 808 AATCACATGTTTGACATACCCTGAGAAGCATTTTGAGAAGGTTCTTCGTCTATCAATCAA 867
|||| ||| |||||||| || |||||| | |||||||||||||| |||| | | |||||
Sbjct 711 GATCAAATGCTTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAA 770
Query 868 CAAAATGGGAACAGACGAATGGGGACTAACCCGAGTCGTGACTACACGAACTGAAGTTGA 927
||| |||||||||||||| |||| ||| || |||| || ||||| ||| | || || ||
Sbjct 771 CAAGATGGGAACAGACGAGTGGGCACTTACTAGAGTAGTCACTACGCGAGCAGAGGTCGA 830
Query 928 CATGGAACGCATCAAAGAGGAATA-TCAGCGAAGAAACAGCATTCCT-TTGGACCGTGCT 985
|||||| || |||||||||||||| | | || || |||||| ||||| ||| | || ||
Sbjct 831 CATGGAGCGAATCAAAGAGGAATACTTA-CGCAGGAACAGCGTTCCTCTTG-ATCGAGCC 888
Query 986 ATCGC-CAAAGACACTTCTGGTGACTATGAGGACATGCTTGTTGCTCTTCTCGGACATGG 1044
|| || ||| ||||||||||||||||| || | |||||| | || ||||| |||||||
Sbjct 889 ATTGCTCAA-GACACTTCTGGTGACTACAAGAATATGCTTCTCGCCCTTCTTGGACATGA 947
Query 1045 CGATGCTTGA 1054
| ||||||||
Sbjct 948 CCATGCTTGA 957
> Ahg940493 jgi|Araly1|940493|scaffold_601037.1
Length=986
Score = 741 bits (401), Expect = 0.0
Identities = 792/976 (81%), Gaps = 45/976 (5%)
Strand=Plus/Plus
Query 100 AATGGCGTCTCTCAAAG-TCCCAAG-CAATGTTCCTCTTCCCGAAGATGACGCCGAGCAA 157
||||||||||||||| | |||| | ||||||||||||||| ||||| ||||| ||||||
Sbjct 21 AATGGCGTCTCTCAAGGTTCCC--GCCAATGTTCCTCTTCCAGAAGAAGACGCTGAGCAA 78
Query 158 CTCCACAAGGCTTTTTCAGGATGGGGTACCAACGAGAAGCTGATCATATCAATAC-TAGC 216
|||||||| || ||| ||||||||| ||||| ||| | ||||||||||||| | | ||
Sbjct 79 CTCCACAAAGCCTTTAAAGGATGGGGAACCAATGAGGGGATGATCATATCAAT-CTTGGC 137
Query 217 TCACAGGAACGCAGCACAACGCAGCTTGATCCGCAGC-GTTTATGCAGCTACCTACAATG 275
|||||| || ||| | |||||||| || || || || |||||||| |||| |||||||
Sbjct 138 TCACAGAAATGCAACGCAACGCAGTTTCATTCG-TGCTGTTTATGCTGCTAACTACAATA 196
Query 276 AGGATCTTCTCAAAGCATTAGACAAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGT 335
||||||||||||| | |||||||| ||||||||| | ||||||||| ||||||||||||
Sbjct 197 AGGATCTTCTCAATGAATTAGACAGAGAGCTTTCCGGTGACTTTGAGCGAGCTGTGATGT 256
Query 336 TGTGGACTCTTGATCCACCAGAGAGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGT 395
|||||||| |||| ||| | |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 257 TGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAAGAATCTACCAAAATGT 316
Query 396 TCACCAAGAACAATTGGGTTCTTGTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTT- 454
||||||| ||||||||||||||||| ||| ||||||| || || ||||||||||| ||
Sbjct 317 TCACCAAAAACAATTGGGTTCTTGTCGAAGTCGCTTGTACTAGATCTGCTCTTGAG-TTC 375
Query 455 ATCAAG-GTCAAGCAAGCTTACCAAGCTCGATACAAGAA-ATCAATCGAGGAAGATGTCG 512
|| || | ||||||||| |||||||| || ||||| || || |||||||||| ||||
Sbjct 376 TTC-AGTGCCAAGCAAGCATACCAAGCCCGTTACAA-AACCTCTCTCGAGGAAGACGTCG 433
Query 513 CGCAACACACATCTGGTGACCTTCGTAAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGT 572
| | ||||||||||| ||| |||| ||||||||| ||||||||||||||||||| ||||
Sbjct 434 CATACCACACATCTGGAGACATTCGAAAGCTCTTGGTTCCTCTTGTGAGCACTTTTAGGT 493
Query 573 ATGAAGGAGATGATGTGAACATGATGCTTGCAAGATCTGAAGCTAAGATACTTCA-CGAG 631
| || |||||||| ||||||||| |||| || || || || |||||||||||||| | ||
Sbjct 494 ACGATGGAGATGAAGTGAACATGGTGCTAGCTAGGTCAGAGGCTAAGATACTTCATC-AG 552
Query 632 AAGGTCTCA-GAGAAATCTTACAG-TGACGATGACT-TCATCAGAATCTTGACAACAAGA 688
||| || | ||||| |||| | ||| || || | |||||||||||||||||||||||
Sbjct 553 AAGATC-GAGGAGAAGGCTTA-TGTTGATGACGA-TCTCATCAGAATCTTGACAACAAGA 609
Query 689 AGCAAAGCACAGCTCGGTGCAACACTCAACCACTACAACAACGAGTAT-GGAAACG-CCA 746
|||||||| || || | ||||| ||||| |||||||| ||| | | | |||| | |||
Sbjct 610 AGCAAAGCTCAAATCAGCGCAACTCTCAATCACTACAAAAACAATT-TCGGAA-CTTCCA 667
Query 747 TTAACAAGA-ACTTGAAGGAAGAGTCGGACGACAATGACTACATGAAACTACTAAGAGCT 805
| ||| | || | ||||| || ||||| ||| | | | || | || | || |||
Sbjct 668 TGGCCAA-ATACCTAAAGGAGGATTCGGAATACATT--C-A-ATTA--CT-C-AA-AGCC 717
Query 806 GTAATCACATGTTTGACATACCCTGAGAAGCATTTTGAGAAGGTTCTTCGTCTATCAATC 865
|| |||| ||| |||||||| || |||||| |||| ||||| ||||| |||| | | |||
Sbjct 718 GTGATCAAATGCTTGACATATCCAGAGAAGTATTTCGAGAAAGTTCTACGTCAAGCCATC 777
Query 866 AACAAAATGGGAACAGACGAATGGGGACTAACCCGAGTCGTGACTACACGAACTGAAGTT 925
|||||| ||||||||||||| |||||||| || |||| || ||||||||| | || |||
Sbjct 778 AACAAACTGGGAACAGACGAGTGGGGACTTACGAGAGTGGTCACTACACGAGCAGA-GTT 836
Query 926 -GACATGGAACGCATCAAAGAGGAATATC-AGCGAAGAAACAGCATTCCT-TTGGACCGT 982
||||||||||| ||||||||||||||| | || |||||||| ||||| ||| | ||
Sbjct 837 TGACATGGAACGGATCAAAGAGGAATATTTA-CGTAGAAACAGTGTTCCTCTTG-ATCGA 894
Query 983 GCTATCGCCAAAGACACTTC-TGGTGACTATGAGGACATGCTTGTTGCTCTTCTCGGACA 1041
|| || || ||||||||| | ||||||||||||||| || ||| | ||||||||||||||
Sbjct 895 GCCATTGCTAAAGACACT-CATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGACA 953
Query 1042 TGGCGATGCTTGAAAC 1057
|| | |||||||||||
Sbjct 954 TGACCATGCTTGAAAC 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5