BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65030.1 Length=609 Score E Sequences producing significant alignments: (Bits) Value Ahg332722 jgi|Araly1|332722|fgenesh1_pm.C_scaffold_8002065 870 0.0 > Ahg332722 jgi|Araly1|332722|fgenesh1_pm.C_scaffold_8002065 Length=609 Score = 870 bits (471), Expect = 0.0 Identities = 565/611 (92%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 1 ATGGGTGTTATGGAGAAGAAACTTCGTTCACTAAAATGCCAAGTGAGAATAGTAGAAGCA 60 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ATGGGTGTCATGGAGAAGAAACTTCGTTCACTAAAATGCGAAGTGAGAATAGTAGAAGCA 60 Query 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120 Query 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGCTCTCTTCGAAATCAGACCAACTC 180 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGATCTCTTCGAAATCAGATCAACTC 180 Query 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTGTCAAAGAATTG 240 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTCTCCAAGAATTG 240 Query 241 AAGCAACAGAGAGTCGTTTTTGAACTACGGAGGAAGAAAATATCGACGTTTCTTAGGAAA 300 |||||||||||||| ||||| || |||||||||||||||| | || ||||||||||||| Sbjct 241 AAGCAACAGAGAGTTGTTTTCGAGCTACGGAGGAAGAAAACACCGTCGTTTCTTAGGAAG 300 Query 301 TCATCTAA-ATCTGAGGTTGTTGGGAGAGGAGAGGTTTCTTGGGAATCGGTTTTCGAGTC 359 ||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 301 TCATC-AAGATCTGAGGTTGTGGGGAGAGGAGAGGTTTCATGGGAATCGGTTTTCGAGTC 359 Query 360 GCCAGGCATGGAGATTGAGAGACTTGTGGTGATGGGTGAATCCAAAAATTGGGTTTT-GG 418 ||| ||||||||||||| |||| ||||||||||||||| ||| | ||| |||||| || Sbjct 360 GCCGGGCATGGAGATTGGGAGATTTGTGGTGATGGGTGTATCGATAAACCGGGTTTCAGG 419 Query 419 AAGATGAAAGACCTTTGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAAATGG 478 | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 420 A-GATGAAAAACCTATGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAGACGG 478 Query 479 AGAAGATGCTGATCAAGAATGACAAGAAAACAGAGAAGCTTTGTTGTGTGTGTAGTAGTA 538 ||||||| | |||||||| ||||||||||||||||| | |||||||||||||||||||| Sbjct 479 AGAAGATTTTTATCAAGAAAGACAAGAAAACAGAGAACCATTGTTGTGTGTGTAGTAGTA 538 Query 539 GAGATTGCGGAAGCTGTAGTTGCTTAGATTATGAGGCTTTTGCTTTAGTTTGTGCTTTAG 598 ||||||| |||||||| | |||||| ||||| || ||||||||||||| ||||||||||| Sbjct 539 GAGATTGTGGAAGCTGCAATTGCTTCGATTACGAAGCTTTTGCTTTAGCTTGTGCTTTAG 598 Query 599 ATTGTATTTAA 609 |||| |||||| Sbjct 599 ATTGCATTTAA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22263783528 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5