BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65030.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332722 jgi|Araly1|332722|fgenesh1_pm.C_scaffold_8002065 870 0.0
> Ahg332722 jgi|Araly1|332722|fgenesh1_pm.C_scaffold_8002065
Length=609
Score = 870 bits (471), Expect = 0.0
Identities = 565/611 (92%), Gaps = 4/611 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGTTATGGAGAAGAAACTTCGTTCACTAAAATGCCAAGTGAGAATAGTAGAAGCA 60
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGTGTCATGGAGAAGAAACTTCGTTCACTAAAATGCGAAGTGAGAATAGTAGAAGCA 60
Query 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120
Query 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGCTCTCTTCGAAATCAGACCAACTC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGATCTCTTCGAAATCAGATCAACTC 180
Query 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTGTCAAAGAATTG 240
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTCTCCAAGAATTG 240
Query 241 AAGCAACAGAGAGTCGTTTTTGAACTACGGAGGAAGAAAATATCGACGTTTCTTAGGAAA 300
|||||||||||||| ||||| || |||||||||||||||| | || |||||||||||||
Sbjct 241 AAGCAACAGAGAGTTGTTTTCGAGCTACGGAGGAAGAAAACACCGTCGTTTCTTAGGAAG 300
Query 301 TCATCTAA-ATCTGAGGTTGTTGGGAGAGGAGAGGTTTCTTGGGAATCGGTTTTCGAGTC 359
||||| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TCATC-AAGATCTGAGGTTGTGGGGAGAGGAGAGGTTTCATGGGAATCGGTTTTCGAGTC 359
Query 360 GCCAGGCATGGAGATTGAGAGACTTGTGGTGATGGGTGAATCCAAAAATTGGGTTTT-GG 418
||| ||||||||||||| |||| ||||||||||||||| ||| | ||| |||||| ||
Sbjct 360 GCCGGGCATGGAGATTGGGAGATTTGTGGTGATGGGTGTATCGATAAACCGGGTTTCAGG 419
Query 419 AAGATGAAAGACCTTTGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAAATGG 478
| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 420 A-GATGAAAAACCTATGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAGACGG 478
Query 479 AGAAGATGCTGATCAAGAATGACAAGAAAACAGAGAAGCTTTGTTGTGTGTGTAGTAGTA 538
||||||| | |||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 479 AGAAGATTTTTATCAAGAAAGACAAGAAAACAGAGAACCATTGTTGTGTGTGTAGTAGTA 538
Query 539 GAGATTGCGGAAGCTGTAGTTGCTTAGATTATGAGGCTTTTGCTTTAGTTTGTGCTTTAG 598
||||||| |||||||| | |||||| ||||| || ||||||||||||| |||||||||||
Sbjct 539 GAGATTGTGGAAGCTGCAATTGCTTCGATTACGAAGCTTTTGCTTTAGCTTGTGCTTTAG 598
Query 599 ATTGTATTTAA 609
|||| ||||||
Sbjct 599 ATTGCATTTAA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5