BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65040.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496726 jgi|Araly1|496726|fgenesh2_kg.8__2542__AT5G65040.1 763 0.0
> Ahg496726 jgi|Araly1|496726|fgenesh2_kg.8__2542__AT5G65040.1
Length=607
Score = 763 bits (413), Expect = 0.0
Identities = 555/618 (90%), Gaps = 31/618 (5%)
Strand=Plus/Plus
Query 53 agagagagagagaagaTGGTGTTAGGAAAGCGTCATGGATCACTGATCAAGAGAACAACT 112
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGATAGAGAAGATGGTGTTAGGAAAGCGTCATGGATCACTGATCAAGAGAACAACA 60
Query 113 AGCATGAAGATGATCACACTCGATACACCCACGATCTATGACGCATCTCAGCCGTCCGAT 172
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 61 AGCATGAAGATGATCACACTCGATACCCCCACGATCTGCGACGCATCTCAACCGTCCGAT 120
Query 173 CATCTAACCTTTCATCAACACCCTCACAATCCGATGGTGGTGATGGCTAGTAACTACGAT 232
||||||||| |||||||||| ||||| ||||||| |||||||||||||| ||||||||||
Sbjct 121 CATCTAACCCTTCATCAACATCCTCATAATCCGACGGTGGTGATGGCTACTAACTACGAT 180
Query 233 GATTTCTTGAAGACTTGTAGTCTCTGCAATCGAAGTCTCTGCCATCATCGTGACATTTAC 292
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTCTTGAGGACTTGTAGTCTCTGCAATCGAAGTCTCTGCCATCATCGTGACATTTAC 240
Query 293 ATGTATAGAGGGAACAACGCATTTTGTAGCTTAGAATGCAGGGAGAAGCAAATTAAGCTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTATAGAGGGAACAACGCATTTTGTAGCTTAGAATGCAGGGAGAAGCAAATTAAGCTG 300
Query 353 GACGAGAAAAAAGCGAAAACCGGCTTCGTAACATCGAAGAAACCAATTCGTATTTAGTTG 412
||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 301 GACGAGAGAAAAGCGAAAACCGGCTTCATATCATCGAAGAAACCAATTCGTGTTTA---- 356
Query 413 ATCATCTATGATCTAAAATGATAACGATAGTTTTTCCTTATGAGTAAAATGAATATGTTT 472
|| || | ||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 AT--TCG-T-ATCTACAACGATAACGATAGTCTTTCCTTATGAGTAAAATGAATATGTTT 412
Query 473 TTGCGTTTCGTGTACAAGAATGATGAAAATTAAGAGAGA-AAA-A-----TGAGA--CTA 523
|||||| || || ||||||||||||||||| |||| | ||| | ||||| |||
Sbjct 413 --GCGTTTTGTATAAAAGAATGATGAAAATTATGAGAAACAAATAGAAGATGAGAGACTA 470
Query 524 AATGAGTGTAGTGATCATATAG-TAATG--G-GACTTCATAAGC-ATGATTTGATTTGTT 578
|||| ||||||||||||||| |||| | |||||||||| |||||||| ||||||
Sbjct 471 AATGCTTGTAGTGATCATATATATAATAATGTGACTTCATAATTTATGATTTGTTTTGTT 530
Query 579 CGTGTGATTTGTTTCTTTGTGA--TGTGTAA--T-ATGTAATGTAAT-ATCAATGTTGAT 632
|||||||||||||||||||||| ||||||| | |||||||| ||| ||||||||||||
Sbjct 531 CGTGTGATTTGTTTCTTTGTGAGATGTGTAAAATTATGTAATG-AATTATCAATGTTGAT 589
Query 633 GTATATTCAGGTGGTCTT 650
||||||||||||||||||
Sbjct 590 GTATATTCAGGTGGTCTT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5