BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65050.3
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 1059 0.0
Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 824 0.0
Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 710 0.0
> Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3
Length=767
Score = 1059 bits (573), Expect = 0.0
Identities = 708/772 (92%), Gaps = 14/772 (2%)
Strand=Plus/Plus
Query 26 aaaaaaaaaaaaaaaaggagagagagagagagagagagagagagagaaacgaagaaaaaa 85
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAAAAA-GAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAACGAAGAAAAAG 59
Query 86 aaagaagcaaaaaaCATTGTGGGTCTCCGGTGATTAGGATCAAATTAGGGCACCAGCCTT 145
|||||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct 60 AAAGAAGC-AAAAACATTGTGGGTCTCTGGTGATTAGAATCAAATTAGGGCATAAGCCTT 118
Query 146 ATCGGAGGAAGAAGCCATGGGTAGaaaaaaaGTCGAGATCAAGCGAATCGAGAACAAAAG 205
||||||| ||||||||||||| |||| ||| |||||||||||||||||||||| ||||||
Sbjct 119 ATCGGAGAAAGAAGCCATGGGAAGAAGAAAGGTCGAGATCAAGCGAATCGAGAGCAAAAG 178
Query 206 TAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGAGAAAGCTCGACAACT 265
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 CAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTCATCGAGAAAGCTCGACAACT 238
Query 266 TTCAATTCTCTGTGAATCTTCCATCGCTGTTCTCGTCGTCTCCGGCTCCGGAAAACTCTA 325
||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 239 TTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTCTCTGGCTCTGGAAAACTCTA 298
Query 326 CAA-GTCTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTACGAAATACATCATG 384
||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 CAACG-CTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTATGAAATACATCATG 357
Query 385 CTGATGAACTTGAA-GCCTTAGATCTTGCAGAAAAAACTCGGAATTATCTGCCACTCAAA 443
|||||||||| ||| |||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 358 CTGATGAACT-GAAAGCCTTAGATCTTGCAGAAAAAATTCGGAATTATCTTCCACACAAG 416
Query 444 GAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTG 503
||| ||||||||||||| |||||||||||||||||| |||||||||||| || ||||||
Sbjct 417 GAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAATGTCGATACTGTAAGTGTA 476
Query 504 GATACTTTAATTTCTCTGGAGGAACAGCTCGAGACTGCTCTGTCCGTAACTAGAGCTAGG 563
||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||| |
Sbjct 477 GATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTGTCCGTAATTAGAGCTAAG 536
Query 564 AAGACAGAACTAATGATGGGGGAAGTGAAGTCCCTTCAAAAAACGGAGAACTTGCTGAGA 623
||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 537 AAGACAGAACTAATGATGGAGGAAGTGAAGTCCCTTCAAGAAACGGAGATGTTGCTGAGA 596
Query 624 GAAGAGAACCAGACTT-TGGCTAGCCAG-----GT-GGGGAAGAAGACGTTTCTGGTTAT 676
||||||||||||| || |||||||||| || ||||||||| ||||||||||| |
Sbjct 597 GAAGAGAACCAGA-TTCTGGCTAGCCATACCCAGTTGGGGAAGAATACGTTTCTGGTAAC 655
Query 677 AGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGAGACTCT 736
||||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 656 AGAAGGTGAGAGAAGAATGTCACGGGAAAATGGCTCCGGCAACAAAGTACCTGAGACTCT 715
Query 737 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTGAGCTTTCACCTTAAACT 788
|||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 716 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTTTCACCTTAAACT 767
> Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2
Length=704
Score = 824 bits (446), Expect = 0.0
Identities = 548/596 (92%), Gaps = 11/596 (2%)
Strand=Plus/Plus
Query 62 agagagagagaaacgaagaaaaaaaaagaagcaaaaaaCATTGTGGG-----T-CTCCGG 115
|||||||||||||||||| ||||||||||||| ||| |||||||||| | ||||||
Sbjct 2 AGAGAGAGAGAAACGAAGCAAAAAAAAGAAGC-AAAGACATTGTGGGTCTCCTCCTCCGG 60
Query 116 TGATTAGGATCAAATTAGGGCACCAGCCTTATCGGAGGAAGAAGCCATGGGTAGaaaaaa 175
||| |||||||||||||||||| | ||||||||| | || |||||||||| |||| |||
Sbjct 61 TGAGTAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAAA 120
Query 176 aGTCGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACG 235
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 AGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACG 180
Query 236 CAATGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGT 295
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGT 240
Query 296 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAA-GTCTGCCTCCGGTGACAACATGTCAA 354
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 241 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACG-CTGCTTCCGGTGACAACATGTCAA 299
Query 355 AGATCATTGATCGTTACGAAATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAG 414
||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359
Query 415 AAAAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 474
|||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419
Query 475 AAGAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCG 534
||||| |||||||||||| || |||||| ||| || |||||||| |||||||||||||||
Sbjct 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479
Query 535 AGACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGT 594
|||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||
Sbjct 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGAAGTGAAGT 539
Query 595 CCCTTCAAAAAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCA 649
|||||||| ||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 540 CCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGA-TTCTGGCTAGCCA 594
> Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2
Length=848
Score = 710 bits (384), Expect = 0.0
Identities = 664/792 (84%), Gaps = 48/792 (6%)
Strand=Plus/Plus
Query 121 AGGATCAAATTAGGGCACCAGCCTTATCGGAGGA-AGAAGCCATGGGTAGaa-aaaaaGT 178
||||| ||||||||||| | |||||||||| || ||||||||||| |||| ||||| |
Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGA-GATTGAAGCCATGGGAAGAAGAAAAA-T 58
Query 179 CGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACGCAA 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 CGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAA 118
Query 239 TGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTCT 298
||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||| |
Sbjct 119 TGGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGT 178
Query 299 CGTCGTCTCCGGCTCCGGAAAACTCTACAAGTCTGCCTCCGGTGACAACAT-GTCAAAGA 357
||||||||| | |||||||||||||||| ||||| ||||||||||| | || | || |
Sbjct 179 CGTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGATAG--AA-GC 235
Query 358 TCATTGATCGTTACGAA-ATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAGAA 416
| | | || || | ||| | | | | ||| ||||| | || ||||||||||||
Sbjct 236 GC-TGG-TCAAGCCGGAGATA-A-C-T-CA-ATGTT-TTGAA-C-TT-GATCTTGCAGAA 284
Query 417 AAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAA 476
|||| || ||||||||| |||| ||| ||||||||||| | |||||||||||||||||||
Sbjct 285 AAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAA 344
Query 477 GAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCGAG 536
||| ||||||||||||||| |||||| ||| || ||||||||||||||||||| ||||||
Sbjct 345 GAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAG 404
Query 537 ACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGTCC 596
|||||||||||||||| ||| ||||||||| ||||||| ||||||| | | |||||||||
Sbjct 405 ACTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTCC 464
Query 597 CTTCAAA-AAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCAGGTGG 654
|| ||| ||| ||||| |||||||| |||||||||||| || ||||||||||| |||
Sbjct 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGG-TTCTGGCTAGCCAGATGG 522
Query 655 GGAAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCATG--GGAAAATGGCT 711
||||||| ||||| |||| ||||| || ||| |||||||||| || ||||| | |||
Sbjct 523 GGAAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGT--TGCCGGAAAGTAGCT 579
Query 712 CCGGCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT- 770
||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 580 CCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTT 639
Query 771 GAGCTTTC-ACCTTAAACTTA-CAGCCTGATTCAGAA-GTTTTTA-CAAATTTGTAAATT 826
||| |||| | |||||||| | | ||||||||||||| | | || |||||||||||
Sbjct 640 GAGTTTTCCAGCTTAAACTCAAC-GCCTGATTCAGAATGAAGAAAACATATTTGTAAATT 698
Query 827 -ATAAAAAGCTTCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATT 884
|||||||||| || ||||||||| |||||| ||||||||| | ||||||| ||
Sbjct 699 TATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAA-TT 749
Query 885 AA-GGTTAAAAA 895
|| |||||||||
Sbjct 750 AAAGGTTAAAAA 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35797419063
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5