BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65060.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 1027 0.0
Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 848 0.0
Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 743 0.0
> Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3
Length=767
Score = 1027 bits (556), Expect = 0.0
Identities = 680/738 (92%), Gaps = 15/738 (2%)
Strand=Plus/Plus
Query 1 AAAGAAGA-AGATAGAAACGAAG---aa-aaa-aaGCAAACACATTTTGGGTCCCCGGTG 54
|||| ||| ||| |||||||||| || ||| ||||||| ||||| |||||| | ||||
Sbjct 32 AAAG-AGAGAGAGAGAAACGAAGAAAAAGAAAGAAGCAAAAACATTGTGGGTCTCTGGTG 90
Query 55 GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAG 114
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 91 ATTAGAATCAAATTAGGGCATAAGCCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAGG 150
Query 115 TCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCA 174
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 151 TCGAGATCAAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCA 210
Query 175 AAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTG 234
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 211 AAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTC 270
Query 235 TCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAAAGA 294
|||||||||| || || |||||||||||| || |||||||||||||||||||||||||||
Sbjct 271 TCGCCGTCTCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGA 330
Query 295 TCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 331 TCATTGATCGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAA 390
Query 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 391 AAATTCGGAATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAG 450
Query 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474
|| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 451 AACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGA 510
Query 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAGTCA 533
|| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 511 CTACTCTGTCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGTGAAGTCC 569
Query 534 CTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAG-----G 588
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 570 CTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAG 629
Query 589 T-GGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCACGGGAAAATGGC 647
| ||||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||||
Sbjct 630 TTGGGGAAGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCACGGGAAAATGGC 689
Query 648 TCCGGCAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT 707
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 690 TCCGGCAACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT 749
Query 708 GAGCTTTCACCATAAACT 725
|| ||||||| ||||||
Sbjct 750 CAGTTTTCACCTTAAACT 767
> Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2
Length=704
Score = 848 bits (459), Expect = 0.0
Identities = 553/596 (93%), Gaps = 16/596 (3%)
Strand=Plus/Plus
Query 5 AAGA-AGATAGAAACGAAG----aaaaa-aaGCAAACACATTTTGGG-----TCC-CCGG 52
|||| ||| |||||||||| ||||| ||||||| ||||| |||| ||| ||||
Sbjct 1 AAGAGAGAGAGAAACGAAGCAAAAAAAAGAAGCAAAGACATTGTGGGTCTCCTCCTCCGG 60
Query 53 TG-GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAA 111
|| | |||||||||||||||||| | ||||||||| |||| ||||||||||||||||||
Sbjct 61 TGAG-TAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAA 119
Query 112 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 179
Query 172 GCAAAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTG 231
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 GCAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTG 239
Query 232 TTGTCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAA 291
|| ||| ||||||||| ||||||||||||||| || |||| |||||||||||||||||||
Sbjct 240 TTCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAA 299
Query 292 AGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 351
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359
Query 352 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419
Query 412 AAGAATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCG 471
||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479
Query 472 AGACTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAG 530
||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGTGAAG 538
Query 531 TCACTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCA 586
|| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 539 TCCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594
> Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2
Length=848
Score = 743 bits (402), Expect = 0.0
Identities = 667/789 (85%), Gaps = 41/789 (5%)
Strand=Plus/Plus
Query 58 AGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAGTCG 117
||||| ||||||||||| || |||||||||||| ||||||||||||||||||||| |||
Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTGAAGCCATGGGAAGAAGAAAAATCG 60
Query 118 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAG 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATG 120
Query 178 GTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCG 237
||||||| || ||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 121 GTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCG 180
Query 238 CCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCA-AAGATC 296
|||||| | ||||||||||||||||| ||| ||||||||||| | | | | ||| |
Sbjct 181 TCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--T-AGAAG--C 235
Query 297 ATTGATC--GTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354
|| || | || ||| | | | | ||| || || ||| |||||||||||||
Sbjct 236 GCTGGTCAAG-CCGGAGATA-A-C-T-C-AATG-TTTTGAA--CTT-GATCTTGCAGAAA 285
Query 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345
Query 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474
|| |||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||
Sbjct 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405
Query 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATATGAAGTCAC 534
|||||||||| |||| ||| |||| |||| ||||||| ||||||||| || ||||||| |
Sbjct 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTC-C 464
Query 535 TTCAA-GAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAGGTGGGG 593
|| || |||| ||||| |||||||| |||||||||||| |||||||||||||| |||||
Sbjct 465 TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGGG 524
Query 594 AAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCACGGGAAAATGGCTCCGG 652
||||| ||||| |||| ||||| || ||| |||||||||| | ||||| | |||||||
Sbjct 525 AAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583
Query 653 CAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT-GAGC 711
||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643
Query 712 TTTC-ACCATAAACTTACTCACAGCCTGATTCAGAA-GCTTTTA-CAAAATTGTAAATT- 767
|||| | | |||||| | || ||||||||||||| | | || | |||||||||
Sbjct 644 TTTCCAGCTTAAACTCA---AC-GCCTGATTCAGAATGAAGAAAACATATTTGTAAATTT 699
Query 768 ATAAAAAGCTGCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATAA 826
||||||||||| || ||||||||| |||||| ||||||||| | ||||||| |||
Sbjct 700 ATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAATTAA 751
Query 827 AGGT-AAAA 834
|||| ||||
Sbjct 752 AGGTTAAAA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5