BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65060.1 Length=939 Score E Sequences producing significant alignments: (Bits) Value Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 1027 0.0 Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 848 0.0 Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 743 0.0 > Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 Length=767 Score = 1027 bits (556), Expect = 0.0 Identities = 680/738 (92%), Gaps = 15/738 (2%) Strand=Plus/Plus Query 1 AAAGAAGA-AGATAGAAACGAAG---aa-aaa-aaGCAAACACATTTTGGGTCCCCGGTG 54 |||| ||| ||| |||||||||| || ||| ||||||| ||||| |||||| | |||| Sbjct 32 AAAG-AGAGAGAGAGAAACGAAGAAAAAGAAAGAAGCAAAAACATTGTGGGTCTCTGGTG 90 Query 55 GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAG 114 |||| |||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 91 ATTAGAATCAAATTAGGGCATAAGCCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAGG 150 Query 115 TCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCA 174 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 151 TCGAGATCAAGCGAATCGAGAGCAAAAGCAGTCGACAAGTTACTTTCTCCAAACGACGCA 210 Query 175 AAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTG 234 ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 211 AAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTCTGAATCTTCCATCGCTGTTC 270 Query 235 TCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAAAGA 294 |||||||||| || || |||||||||||| || ||||||||||||||||||||||||||| Sbjct 271 TCGCCGTCTCTGGCTCTGGAAAACTCTACAACGCTGCCTCCGGTGACAACATGTCAAAGA 330 Query 295 TCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 331 TCATTGATCGTTATGAAATACATCATGCTGATGAACTGAAAGCCTTAGATCTTGCAGAAA 390 Query 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 391 AAATTCGGAATTATCTTCCACACAAGGAGATACTAGAAATAGTTCAAAGCAAGCTTGAAG 450 Query 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474 || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 451 AACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGA 510 Query 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAGTCA 533 || ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 511 CTACTCTGTCCGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGA-AGTGAAGTCC 569 Query 534 CTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAG-----G 588 |||||||||| ||||| |||||||| ||||||||||||||||||||||||||| | Sbjct 570 CTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCATACCCAG 629 Query 589 T-GGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCACGGGAAAATGGC 647 | ||||||||| ||||||||||| | ||||||||| ||| |||||||||||||||||||| Sbjct 630 TTGGGGAAGAATACGTTTCTGGTAACAGAAGGTGAGAGAAGAATGTCACGGGAAAATGGC 689 Query 648 TCCGGCAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT 707 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 690 TCCGGCAACAAAGTACCTGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT 749 Query 708 GAGCTTTCACCATAAACT 725 || ||||||| |||||| Sbjct 750 CAGTTTTCACCTTAAACT 767 > Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 Length=704 Score = 848 bits (459), Expect = 0.0 Identities = 553/596 (93%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 5 AAGA-AGATAGAAACGAAG----aaaaa-aaGCAAACACATTTTGGG-----TCC-CCGG 52 |||| ||| |||||||||| ||||| ||||||| ||||| |||| ||| |||| Sbjct 1 AAGAGAGAGAGAAACGAAGCAAAAAAAAGAAGCAAAGACATTGTGGGTCTCCTCCTCCGG 60 Query 53 TG-GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAA 111 || | |||||||||||||||||| | ||||||||| |||| |||||||||||||||||| Sbjct 61 TGAG-TAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAA 119 Query 112 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 179 Query 172 GCAAAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTG 231 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 180 GCAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTG 239 Query 232 TTGTCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAA 291 || ||| ||||||||| ||||||||||||||| || |||| ||||||||||||||||||| Sbjct 240 TTCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAA 299 Query 292 AGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 351 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359 Query 352 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419 Query 412 AAGAATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCG 471 ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479 Query 472 AGACTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAG 530 ||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGTGAAG 538 Query 531 TCACTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCA 586 || |||||||||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 539 TCCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594 > Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 Length=848 Score = 743 bits (402), Expect = 0.0 Identities = 667/789 (85%), Gaps = 41/789 (5%) Strand=Plus/Plus Query 58 AGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAGTCG 117 ||||| ||||||||||| || |||||||||||| ||||||||||||||||||||| ||| Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTGAAGCCATGGGAAGAAGAAAAATCG 60 Query 118 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAG 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 61 AGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAATG 120 Query 178 GTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCG 237 ||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 121 GTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTCG 180 Query 238 CCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCA-AAGATC 296 |||||| | ||||||||||||||||| ||| ||||||||||| | | | | ||| | Sbjct 181 TCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGA--T-AGAAG--C 235 Query 297 ATTGATC--GTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAA 354 || || | || ||| | | | | ||| || || ||| ||||||||||||| Sbjct 236 GCTGGTCAAG-CCGGAGATA-A-C-T-C-AATG-TTTTGAA--CTT-GATCTTGCAGAAA 285 Query 355 AAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAG 414 |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 286 AAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAAG 345 Query 415 AATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGA 474 || |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 346 AACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAGA 405 Query 475 CTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATATGAAGTCAC 534 |||||||||| |||| ||| |||| |||| ||||||| ||||||||| || ||||||| | Sbjct 406 CTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTC-C 464 Query 535 TTCAA-GAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAGGTGGGG 593 || || |||| ||||| |||||||| |||||||||||| |||||||||||||| ||||| Sbjct 465 TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGGTTCTGGCTAGCCAGATGGGG 524 Query 594 AAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCACGGGAAAATGGCTCCGG 652 ||||| ||||| |||| ||||| || ||| |||||||||| | ||||| | ||||||| Sbjct 525 AAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGTTGCCGGAAAGTAGCTCCGG 583 Query 653 CAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAATCACCATCATCAACGGCT-GAGC 711 ||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 584 CAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTTGAGT 643 Query 712 TTTC-ACCATAAACTTACTCACAGCCTGATTCAGAA-GCTTTTA-CAAAATTGTAAATT- 767 |||| | | |||||| | || ||||||||||||| | | || | ||||||||| Sbjct 644 TTTCCAGCTTAAACTCA---AC-GCCTGATTCAGAATGAAGAAAACATATTTGTAAATTT 699 Query 768 ATAAAAAGCTGCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATAA 826 ||||||||||| || ||||||||| |||||| ||||||||| | ||||||| ||| Sbjct 700 ATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAATTAA 751 Query 827 AGGT-AAAA 834 |||| |||| Sbjct 752 AGGTTAAAA 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34844346138 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5