BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65070.3

Length=1010
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918304 jgi|Araly1|918304|Al_scaffold_0008_3055                    510    6e-144


> Ahg918304 jgi|Araly1|918304|Al_scaffold_0008_3055
Length=699

 Score =  510 bits (276),  Expect = 6e-144
 Identities = 336/364 (92%), Gaps = 8/364 (2%)
 Strand=Plus/Plus

Query  407  GATCTAGAAGAAAAAACTCTTAATTATCTTTCGCACAAGGAGTTGCTAGAAACAATCCAA  466
            |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  340  GATCTAGAAGAAAAAAATCTTAATTATCTTTCACACAAGGAGTTGCTAGAAATAATCCAA  399

Query  467  TGCAAGATTGAAGAAGCGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA  526
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  400  TGCAAGATTGAAGAAACGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA  459

Query  527  GAGCAGCTCAAGACTGCTCTGTCTGTAACTAGAGCTAGGAAGACAGAACTAATGATGGAG  586
            |||||| ||||||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct  460  GAGCAGATCAAGACTGCTCTGTCTATAACTAGAGCTAGGAAGGCAGAACTCACGATGGAG  519

Query  587  CTTGTGAAGACCCATCAAGAGAAGGAGAAGCTGCTGAGAGAGGAGAACCAGAGTTT-GAC  645
             |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||| |||
Sbjct  520  TTTGTGAAGACCCTTCAAGAGAAGGAGAAGCTGCTGATAGAAGAGAACCAG-GTTTTGAC  578

Query  646  TAA-CCAGCTTATAAAGATGGGGAAGATGAAGAAGTCT-GTGGAAGCAGAGGATGCAAGA  703
             || |||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct  579  -AAGCCAGCTTAAAAAGATGGGGAAGATGAAGAAGTCTAG-GGAAACAGAGGATGCAAGA  636

Query  704  GCAATGTCACCGGAAAGTAGCTCT-GACAACAAGCCACCGGAGACTCTCCTGCTTCTCAA  762
            ||||||||||| |||| ||| ||  || |||||||||||||||||||||||||| |||||
Sbjct  637  GCAATGTCACCCGAAAATAGTTCCCGA-AACAAGCCACCGGAGACTCTCCTGCTGCTCAA  695

Query  763  GTAA  766
            ||||
Sbjct  696  GTAA  699


 Score =  309 bits (167),  Expect = 3e-83
 Identities = 179/185 (97%), Gaps = 0/185 (0%)
 Strand=Plus/Plus

Query  68   ATGGGAAGAAGAAAAGTAGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT  127
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAAGAAGAAAAGTGGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT  60

Query  128  TTCTGTAAACGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTTTGTGAA  187
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  61   TTCTGTAAGCGACGAAATGGACTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGAA  120

Query  188  TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCAGGT  247
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  121  TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCTGGC  180

Query  248  GATAG  252
            |||||
Sbjct  181  GATAG  185


 Score =  102 bits (55),  Expect = 5e-21
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  349  CATGGCCAAGATCCTCAGTCGTTATGAATTAGAACAGGCTGATGATCTTAAAACCTTG  406
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  186  CATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAACCTTG  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37551073245


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5