BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65090.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332725 jgi|Araly1|332725|fgenesh1_pm.C_scaffold_8002068 2682 0.0
> Ahg332725 jgi|Araly1|332725|fgenesh1_pm.C_scaffold_8002068
Length=1584
Score = 2682 bits (1452), Expect = 0.0
Identities = 1545/1590 (97%), Gaps = 6/1590 (0%)
Strand=Plus/Plus
Query 130 ATGAACAATAGAGGAAATAATGATGACCTAGACCACCACTATGGAGTTTTCAATGATTTT 189
|||||||| |||||| |||||||||||| | | |||||||| |||||||||||||||||
Sbjct 1 ATGAACAACAGAGGAGATAATGATGACC-A-A-GACCACTATCGAGTTTTCAATGATTTT 57
Query 190 GAGCGACGAATGACGTCTCGAAAGAAATCGGTTCTTGACAACACTTCTCCAATGATTTGG 249
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 GAGCGACGAATGGCTTCTCGAAAGAAATCGATTCTTGACAACACTTCTCCAATGATTTGG 117
Query 250 AAGACTGTTTCTGAGAGAAAGTCAAGTCCTGGAATTGAAGGCTTGAATCTATCGAGTTTT 309
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 AAGACTGTTTCTGAGAGAAAGTCAAGTCCTGGAATTGAAGGCTTGAATCTGTCGAGTTTC 177
Query 310 GATAGGCCTATGGCACCAACTACAGAGATTCGTGAACTCAGGGTGTTTCTAGCTACGTGG 369
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 GATAGGCCTATGGCACCAACAACAGAGATTCGTGAACTCAGGGTGTTTCTAGCTACGTGG 237
Query 370 AACGTAGGAGGAAGAACACCAAACAATGATCTTAACCTCGAAGACTTCTTACTCGTTGAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AACGTAGGAGGAAGAACACCAAACAATGATCTTAACCTCGAAGACTTCTTACTCGTTGAA 297
Query 430 GGCACAGCAGATTTATATATCTGTGGCTTTCAAGAGATTGTTCCTCTAAGTGCAGGAAAC 489
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 298 GGCACAGCAGATTTATATATCTGTGGGTTTCAAGAGATTGTTCCTCTAAGTGCAGGAAAC 357
Query 490 GTATTAGTAGTTGAGGATAACGAGCCAGCAGCTAAGTGGTTAGCTCTAATAAGTCAAGCT 549
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 358 GTATTAGTAGTTGAGGATAACGAGCCTGCAGCTAAATGGTTAGCTCTAATAAGTCAAGCT 417
Query 550 TTAAACAAACCGAAACAGGAATCTGTTTATTCGAATGCAGCTTACTCTGCTTCAAGAACA 609
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 TTAAACAAACCGAAACAAGAATCTGTTTATTCGAATGCAGCTTTCTCTGCTTCAAGAACA 477
Query 610 ACTACTTGTAGTAGTAGTAGTTGTGGTAGTGAAGAATCAAGAGCACCAAGTAGTCTAAGT 669
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 ACTACTTGTAGTAGTAGTAGTTGTGGTAGTGAAGAATCAAGAACACCAAGTAGTCTAAGT 537
Query 670 TTCTTTCAAAGACCGAATCTTAAGGTCTTGAGCAGAAATTATAGAGTCGATTCAAGTCTT 729
|||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct 538 TTCTTTCAAAGACCAAATCTTAAAGTTTTGAGCAGAAACTATAGGGTTGATTCAAGTCTT 597
Query 730 TTAAAGACTTGTAATTGTCCGGTTATCGATACTTCGGTTGGTTGGGAAGCGAGGAGATCG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTAAAGACTTGTAATTGTCCGGTTATCGATACTTCGGTTGGTTGGGAAGCGAGGAGATCG 657
Query 790 AAAAGGTTTAGTGATCCTAGTACAGATAGTAGTAACAATGTGGAGCCTGAGAACTTTAGG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAAGGTTTAGTGATCCTAGTACAGATAGTAGTAACAATGTGGAGCCTGAGAACTTTAGG 717
Query 850 GTTCATGAGAATTTCTTGTTTGATGATGTTCCTGCGACTACCAAGATGCCAGGACAAATG 909
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 GTTCATGAGAATTTCTTATTTGATGATGTTCCTGCGACTACGAAGATGCCAGGACAAATG 777
Query 910 AGTTATCGATTGATTGCGAGTAAACAAATGGTTGGTTTGTTTTTGTCTGTTTGGGCTAGA 969
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 778 AGTTATCGATTGATCGCGAGTAAACAGATGGTTGGTTTGTTTTTGTCTGTTTGGGCTAGA 837
Query 970 AGAGAGTTGATTCCACATATATCTCATCTTAGACTTGATTCTGTTGGGAGAGGAATCATG 1029
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 AGAGAGTTGATTCCACATATATCTCATCTTAGACTTGACTCTGTTGGGAGAGGAATCATG 897
Query 1030 GGTCGCTTAGGGAACAAGGGATGCATTGCTATAAGCATGTCATTGCACCAAACGAGCTTT 1089
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 898 GGTCGCTTAGGGAACAAGGGATGTATTGCTATAAGCATGTCATTGCACCAAACGAGCTTT 957
Query 1090 TGCTTTGTGTGTAGCCATTTGGCTTCTGGTGAGAAAGAAGGTGATGAGCTGAGAAGAAAC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGCTTTGTGTGTAGCCATTTGGCTTCTGGTGAGAAAGAAGGTGATGAGCTGAGAAGAAAC 1017
Query 1150 GCAGACGTAGCTGAGATTCTGAAACATACTCAATTCCCTAAACTCACCAAGAACCCTAAT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCAGACGTAGCTGAGATTCTGAAACATACTCAATTCCCTAAACTCACCAAGAACCCTAAT 1077
Query 1210 TGTCACGCACCCGAAAGAATCATTGATCATGACCGAGTGCTTTGGCTAGGAGATTTGAAT 1269
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 TGTCACGCACCCGAAAGAATCGTTGATCATGACCGAGTGCTTTGGCTTGGAGATTTGAAT 1137
Query 1270 TACAGAGTTGCATTAACCTATGAAGAGACGAGAGTATTACTAGAAGACAATGATTGGGAC 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TACAGAGTTGCATTAACCTATGAAGAGACGAGAGTATTACTAGAAGACAATGATTGGGAC 1197
Query 1330 ACTCTTCTTGAGAGAGACCAGCTAAACATGGAAAGAGGAGCAGGAAGAGTCTTTTCAGGA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACTCTTCTTGAGAGAGACCAGCTAAACATGGAAAGAGGAGCAGGAAGAGTCTTTTCAGGA 1257
Query 1390 TTTCAAGAAGGTCAAATCTTCTTTGCTCCAACCTATAAGTACTCTCAGAACTCAGATGCT 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTTCAAGAAGGTCAAATCTTCTTTGCTCCAACCTATAAGTACTCTCAGAACTCAGATGCT 1317
Query 1450 TACGCCGGAGAAATGACCAAGTCCAAGAAAAAACGCCGTACTCCGGCTTGGTGTGATAGG 1509
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1318 TACGCCGGAGAAATGACCAAGTCCAAGAAAAAACGCCGTACTCCTGCTTGGTGTGATCGG 1377
Query 1510 ATTCTATGGAAAGGAGAAGGAATAGAACAGCTTTCATATATTCGCGGCGAATCGCGGTTT 1569
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 ATTCTATGGAGAGGAGAAGGAATAGAACAGCTTTCATATATTCGAGGCGAATCGCGGTTT 1437
Query 1570 TCAGATCATAGACCAGTTTGCGCGATCTTTGCAGTAGAAGTTGATGTGAAGAGTCTAAAC 1629
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1438 TCAGATCATAGACCGGTTTGCGCCATCTTTGCAGTAGAAGTTGATGTGAAGAGTCTGAAC 1497
Query 1630 AAAGGTAGATTCAGGAAAGGTTATTCTTGTGCGGCTGTAAGATTGGTTGAAGATGTGGCT 1689
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 1498 AAAGGTAGATTCAGGAAAGGTTATTCTTGTGCGGCTGCAAGACTGGTTGAAGAT-TG-C- 1554
Query 1690 ATTCCACAAAGGCATAGTTTTTATGACTAA 1719
||||||||||||||||||||||||||||||
Sbjct 1555 ATTCCACAAAGGCATAGTTTTTATGACTAA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5