BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65100.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496732 jgi|Araly1|496732|fgenesh2_kg.8__2548__AT5G65100.1 1563 0.0
Ahg487838 jgi|Araly1|487838|fgenesh2_kg.6__972__AT5G10120.1 586 2e-166
> Ahg496732 jgi|Araly1|496732|fgenesh2_kg.8__2548__AT5G65100.1
Length=1623
Score = 1563 bits (846), Expect = 0.0
Identities = 946/996 (95%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAGGTCCAAGATTTAGAACCACTTAGTCCAATACAGGACTACGATGAAGATGAC 60
||||||||||| ||||||||||||||||| |||||||| || ||| | |||| |||||
Sbjct 1 ATGGTGGAGGTTCAAGATTTAGAACCACTAAGTCCAATTCAAGACGAAGATGGCGATGAA 60
Query 61 CTCGAAGAAGACGTGGACGAATTTGAACGTTTTGGTGAAGAAATCAGCTACGACGATCTC 120
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGAAGAAGATGAGGACGAATTTGAACGTTTTGGTGAAGAAATCAGCTACGACGATCTC 120
Query 121 AAGAAACGCATGTGGAAAGATCGAAACCTCATGTGTAAGCTTAAACAGCAAAAAAGAGAT 180
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 AAGAAACGCATGTGGAAAGATCGAAACCTCATGTGTAAGCTCAAGCAGCAGAAAAGAGAT 180
Query 181 AATCTTAACTCCGTTATCTCTTCGCCGTCATCTTCCACGTCAGCATCATCCTCTTCATCA 240
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AATCATAGCTCCGTTATCTCTTCGCCGTCATCTTCCACGTCAGCATCATCCTCTTCCTCC 240
Query 241 TCCTCCGTTATCGTGCGCCGAACTGAAGCTTCACGGCGCAAGAAAATGGCTCGATCTCAA 300
||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCCTCCGGTATCGTGCGCCGAGCAGAAGCTTCACGCCGCAAGAAAATGGCTCGATCTCAA 300
Query 301 GATTCGGTGTTGAAGTACATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTCGGTGTTGAAGTACATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTT 360
Query 361 TACGGAATCGTACCGGAAAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACGGAATCGTACCGGAAAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGT 420
Query 421 TGGTGGAAAGAAAACGTTCAATTCGACCAAACCGCTCCAAACGCTGTTTCTGATTACTTG 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TGGTGGAAAGAAAACGTTCAATTCGATCAAACCGCTCCAAACGCTGTTTCTGATTACTTA 480
Query 481 ACATTAGCGGCTGCTCAGTTAATCTCATCAAACGAATCTTTAGATCCGAATTCGTATATC 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTAGCGGCTGCTCAGTTAATCTCATCAAACGAATCTTTAGATCCGAATTCGTATATT 540
Query 541 CACATGCTTCACGAGCTACAAGACACGACGTTAGGGTCATTGTTATCAGCTTTGATGCAA 600
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 541 CACATGCTTCACGAGCTACAAGACACGACTTTAGGTTCGTTGTTATCAGCTTTGATGCAA 600
Query 601 CATTGCGTGCCGCCACAACGACGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGG 660
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTGCGTACCCCCACAACGGCGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGG 660
Query 661 CCGAACGGGACAGAGTTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAACACGGTCCA 720
|| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 661 CCCAACGGGACGGAGTTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAGCATGGTCCG 720
Query 721 CCTCCATATCGCAAACCGCACGATCTAAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCT 780
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 721 CCTCCATATCGGAAACCGCACGATTTGAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCT 780
Query 781 GTGATTAAACACATGTCGCCGAATTTGGAGAGAGTGAGACGGCTCGCGAGACAGTCAAAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GTGATTAAACACATGTCGCCGAATTTGGAGAGAGTGAGACGGCTCGCGAGACAGTCCAAG 840
Query 841 TGTTTGCAAGATAAGATGATGGCGAAAGAGACTGATACTTGGTCTCGTGTGTTGAACCAA 900
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 841 TGTTTGCAAGATAAGATGATGGCGAAAGAGACCGATACCTGGTCTCGTGTGTTGAATCAA 900
Query 901 GAAGAAGCTCGTCTCAATCGCCTCAAGATCTCAGATGACGAAGACGAGGATCGAGATCAA 960
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GAAGAAGCTCGTCTCAATCGCCTCAAGATCTCAGATGACGAGGACGAGGATCGAGATCAA 960
Query 961 GAACAAGCAAGATTCACATGTTTTGATCAAGAACCG 996
|||| |||||||||||| ||||||||| ||||||||
Sbjct 961 GAACTAGCAAGATTCACTTGTTTTGATAAAGAACCG 996
Score = 813 bits (440), Expect = 0.0
Identities = 566/626 (90%), Gaps = 12/626 (2%)
Strand=Plus/Plus
Query 1058 ACAAAAGGGTTGATCAGGAATTTTCCTCGAACGATTGTTTCCTTGTAGCGCAAGATCAAG 1117
|||||||||||||||| |||| ||||| |||| | ||||| |||||||||||||||||||
Sbjct 1001 ACAAAAGGGTTGATCAAGAATCTTCCTTGAACAACTGTTTTCTTGTAGCGCAAGATCAAG 1060
Query 1118 AACCTAG-GAAAGGAAAAAA-GGCTGATCAAGAATGGTCTCCAAATTCTTGTTTTCTTGT 1175
|| | | | || ||||||| || |||||||||| ||| | |||| |||||||||||||
Sbjct 1061 AA--TTGCGGAATGAAAAAAGGGTTGATCAAGAAAAGTCGCTAAATACTTGTTTTCTTGT 1118
Query 1176 ------TGATCAAGAACCA-TTAGGTAACAAGAGAAAAGGTGAGTTCGTGGAAAAAGAGG 1228
||||||||| || || ||||| |||||||||||| |||| | ||| | ||||
Sbjct 1119 GGCCCAAGATCAAGAA-CAGTTGGGTAATAAGAGAAAAGGTAAGTTTGCGGAGCATGAGG 1177
Query 1229 CGATGTTATCTAATGTATACACTTGCCAAAACTCGAGTTGTCCTTCGAGTGATGTGAGTT 1288
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CGATGTTATCTAATGTCTACACTTGCCAAAACTCGAGTTGTCCTTCGAGTGATGTGAGTT 1237
Query 1289 TAGGATTCGTGGACAAGAACTTGAGAACCGGTCACGAGATTGAGTGTCTTTACGGGACTC 1348
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1238 TAGGATTCGTGGACAAGAACTTGAGGACCGGCCACGAGATTGAGTGTCTCTACGGGACTC 1297
Query 1349 CAGAACTGGTAAACCAGAGTAGTGGTGGCGGCTCGGATGGGTTTGTTCGGTCGATTACTA 1408
|||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1298 AAGAACTGGCAAACCAGAGTAGTGGTGGTGGCTCGGATGGGTTTGTTAGGTCGATGACTA 1357
Query 1409 CGAGTGACGATGATTACAGCGCCAGCTCGAAAGCAGAGGACACAAGAGATTATCATAATC 1468
||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1358 CGAGTGATGATGATTACAGCGCGAGCTCCAAGGCAGAGGACACAAGAGATTATCATAATC 1417
Query 1469 AAGATGGAAACTGGCTAGATTATCTCTGGTTCGAGAGGTTACATGACTTGAATTTTTCTG 1528
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1418 AAGATGGAAACTGGCTAGATTATCTCTGGTTCGAGAGGTTACATGACTTGAACTGTTCTG 1477
Query 1529 ATCAAGGATTTGAAGATCAAACAAGCACAGTGGATTTGAACCAATTACCAGATCATTCTG 1588
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1478 AGCAAGGATTTGAAGATCAAACGAGCACAGTGGATTTGAACCAATTACCAGATCATTCTG 1537
Query 1589 ACTCCAATCAAACCATGAACGAGGATGACATCTCGTTATGGGACATGGGTTGTGAAGACA 1648
|||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1538 ACTCGAATCAGACCATGAACGAGGAAGATTTCTCGTTATGGGACATGGGTTGTGAAGACA 1597
Query 1649 AAGATATTTATATGTCTCAAGATTGA 1674
||||||||| |||||||||||||||
Sbjct 1598 GAGATATTTACATGTCTCAAGATTGA 1623
> Ahg487838 jgi|Araly1|487838|fgenesh2_kg.6__972__AT5G10120.1
Length=1398
Score = 586 bits (317), Expect = 2e-166
Identities = 593/721 (82%), Gaps = 40/721 (6%)
Strand=Plus/Plus
Query 258 CCGAACTGAAGCTTCACGGCGCAAGAAAATGGCTCGATCTCAAGATTCGGTGTTGAAGTA 317
|||| | ||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 165 CCGAGCCGAAGCGTCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCGGTGTTGAAGTA 224
Query 318 CATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTTTACGGAATCGTACCGGA 377
|||||||||||| ||||| || || ||||| |||| || || |||||||| ||||||||
Sbjct 225 CATGATGAAGATCATGGAGGTGTGTAAAGCGAAAGGGTTTGTCTACGGAATTGTACCGGA 284
Query 378 AAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGTTGGTGGAAAGAAAACGT 437
||| |||||||| |||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 285 AAAGGGTAAACCAATAACGGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGT 344
Query 438 TCAATTCGACCAAACCGCTCCAAACGCTGTTTCTGATTACTTGACATTAGCGGCTGC-TC 496
||| |||||||||| ||||||| ||||| | |||||||||| ||| | |||||||| |
Sbjct 345 TCAGTTCGACCAAAACGCTCCAGACGCTATCACTGATTACTTAACACTCGCGGCTGCGGC 404
Query 497 AG-TTAATCTCATC-AAACG--AA-TCTTTA-GATC--CGAATTCGTATA-TCCACATGC 547
| | | | | | || || || |||| | ||| || | | | || | ||||||
Sbjct 405 TGCTGCAGCAGAGCTAATCGATAAGTCTTCATCATCATCG-A-GC-T-TACTACACATG- 459
Query 548 TT-CACGAGCTACAAGACACGACGT-TAGGGTCATTGTTATCAGCTTTGATGCAACATTG 605
|| || ||||||||||||||||| | ||||||| || ||||||| || |||||||||||
Sbjct 460 TTACAAGAGCTACAAGACACGAC-TCTAGGGTCGTTACTATCAGCGTTAATGCAACATTG 518
Query 606 CGTGCCGCCACAACGACGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGGCCGAA 665
| |||||||||| || ||||||||||| || ||||| | |||||||| ||||||||| |
Sbjct 519 CATGCCGCCACAGCGGCGGTTTCCGTTAGAGAAAGGAATCGCTCCGCCATGGTGGCCG-A 577
Query 666 CGGG-ACAGAG-TTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAACACGGTCCACCT 723
|||| || ||| || |||||||||||||||||| ||||| ||| |||||| | ||
Sbjct 578 CGGGTACGGAGCTT-TGGTGGGGAGAGCAAGGA---GCGGCACATGAGCACGGTGCGCCG 633
Query 724 CCATATC-GCAAA-CCGCACGATCTAAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCTG 781
||||| | | ||| ||||||||| | |||||| |||||||||| || ||| | |||||||
Sbjct 634 CCATA-CAG-AAAGCCGCACGATTTGAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCTG 691
Query 782 TGATTAAACACATGTCGCCGAATTTGGAGA-GAGTGAGACGGCTCGCGAGACAGTC-AAA 839
||||||||||||||||||||||||||| || |||||||||| ||||||||||| || |||
Sbjct 692 TGATTAAACACATGTCGCCGAATTTGG-GAAGAGTGAGACGTCTCGCGAGACAATCTAAA 750
Query 840 GTGTTTGCAAGATAAGATGATGGCGAAAGAGACTGATACTTGGTCTCGTGTGTTGAACCA 899
|||||||||||||||||||||| |||||||| |||||||||||||| || || |||||
Sbjct 751 A-GTTTGCAAGATAAGATGATGGCTAAAGAGACCGATACTTGGTCTCGAGTCTTAAACCA 809
Query 900 AGAAGAAGCTCGTCTCAAT--C---G-CCTCAAGATCTCAGATGACGAAGA-CGAGGATC 952
||||||||||| ||||||| | | |||||||||||| || ||| |||| | || |||
Sbjct 810 AGAAGAAGCTCTTCTCAATATCAAAGACCTCAAGATCTCGGAAGACCAAGATCAAGAATC 869
Query 953 G 953
|
Sbjct 870 G 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5