BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65120.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358710 jgi|Araly1|358710|fgenesh1_pg.C_scaffold_8002497 1378 0.0
> Ahg358710 jgi|Araly1|358710|fgenesh1_pg.C_scaffold_8002497
Length=966
Score = 1378 bits (746), Expect = 0.0
Identities = 896/967 (93%), Gaps = 16/967 (2%)
Strand=Plus/Plus
Query 195 ATGACTGGAGATTGG-TGCAGCCTAGTAGTGTCCAAGGAAACACGTGTCGCATTGTGTGA 253
||||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 1 ATGACTGGAGA-TGGCTGCAGCTTAGTAGCGTCCAAGGAAACACGTCTCGCATTGTGTGA 59
Query 254 TATGACTAACCTTCCAAGCAAGAGAGGGCTTTCAGCGATTTTGGGAGATTTGCTACTTAA 313
||||||||| |||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct 60 TATGACTAATGTTCCAAGCAAGAGAGGTCTTTCAGCTATTTTGGGTGATTTGCTTCTTAA 119
Query 314 ATCTGGAGATGATTCTGGTAAGAGCCTTGCTGCTCGTGAAGGCTCCGGTGTTAAGTTTTC 373
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 120 ATCTGGAGATGATTCTGGTAAGAGCCTTGTTGCTCGTGAAGGCTCTGGGGTTAAGTTTTC 179
Query 374 CAAGAGGTTGTGTTTAGTTGTTGACGACTTGGTCAAAGAGAGTACTAGGACTAGTGATAC 433
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 CAAGAGGTTGTGTTTAGTTGTTGACGACTTGGTCAAGGAGAGTACTAGGACTAGTGATAC 239
Query 434 TAATGAAGCTTCTTCTTCTGAGGATAAGA-T--TAGTTATGATTGTGATTCTGAGAATTT 490
|||||||||||||||||||| ||||| | | ||||| |||||||||||||||||||||
Sbjct 240 AAATGAAGCTTCTTCTTCTGATGATAAAATTAGTAGTTTTGATTGTGATTCTGAGAATTT 299
Query 491 AGATGTCAAAGAATCTCAGGGTGAAACCAATGCCGGAGATATTGATGTGGAACCT--TC- 547
||||| |||||||||||||||||||||||||||| |||||||| ||| |||||| ||
Sbjct 300 CGATGTTAAAGAATCTCAGGGTGAAACCAATGCCGTAGATATTGGTGTTGAACCTAGTCA 359
Query 548 ---TAAAGATGATACTGTGAAAGAGACGTGTGAGAAAGACTCGAACATGAATGTATGTGG 604
| | | |||||||||||| ||||||||||||||||||||||||||| |||| ||| |
Sbjct 360 TGGTGATGGTGATACTGTGAAGGAGACGTGTGAGAAAGACTCGAACATGGATGTCTGT-G 418
Query 605 C-AGTCAAACCGATGCTGTTACTAGTGAAGACTTAGCTATGACTCTGTTTAGTAGCAACA 663
| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 419 CTAGTCAAACCGATGCTGTTACCAGTGAAGACTTAGCTATGACTCTGTTCAGTTGCAACA 478
Query 664 ATAATGAAAGTGAGGGTTTGTTAGTGCCTAATCCTCAGGCTATCAAATCGTTTAATATGA 723
||| |||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||| |
Sbjct 479 ATAGTGAAAGTGCGGGTTTGTTGGTGCCTAATTCTCAGACTATCAAATCGTTTAATATTA 538
Query 724 ATAGATGTTCGAATGTTGACGGTATGGGAA---TTGTTAATCACCATATGGAAGCTGACG 780
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 539 ATAGATGTTCGAATGTTGACGCTATGGGAATTGTTGTTAATCACGATATGGAAGCTGACC 598
Query 781 GCGAGCTTAAATCTTGCTCTTGTTCATTTTGCCTGACAGCTGCATATATCTGGTCAGATC 840
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 599 AAGAGCTTAAATCTTGCTCTTGTTCTTTTTGCCTGAAAGCTGCATATATCTGGTCAGATC 658
Query 841 TTCACTACCAGGATATCAAAGGTCGATTATCTGTGTTGAAGAAGAGCCAGAAAGAAGCTA 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCATTACCAGGATATCAAAGGTCGATTATCTGTGTTGAAGAAGAGCCAGAAAGAAGCTA 718
Query 901 GTGGCTTGATCCAAAGGAACGATAGAGGAACGCCAACGGATATTTATGGATCTGAAAACT 960
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 719 GTGGCTTGATCCAAAGGAATGATAGAGGAAAGCCAATGGATATTTATGGATCTGAAAACT 778
Query 961 CCAACAACTCCACAAATACAGATAATCCCATGGAACAATGGACATCTCTATTTCGTAACA 1020
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 779 CCAATAACTCCACAAATACAGAAAATCCCATGGATCAATGGACATCTCTATTTCTTAACA 838
Query 1021 TGGAAGGTATCTTGGCTCGTGAAAGCAACCACCTCCACAATAGCTTTGTAGCCATGAAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGAAGGTATCTTGGCTCGTGAAAGCAACCACCTCCACAATAGCTTTGTAGCCATGAAAG 898
Query 1081 AGTTGAGAGAAAATTGCAAGATTGATCTGGAGAGAGCGACGAAAACATCTCAACAAAACA 1140
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 899 AGTTGAGAGAAAATTGCAAGATTGATCTGGAGAGAGCAACGAAAACACCTCAACACAACA 958
Query 1141 ACACTTA 1147
|||||||
Sbjct 959 ACACTTA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5