BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65130.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951352 jgi|Araly1|951352|scaffold_803239.1 1077 0.0
> Ahg951352 jgi|Araly1|951352|scaffold_803239.1
Length=901
Score = 1077 bits (583), Expect = 0.0
Identities = 774/861 (90%), Gaps = 33/861 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTAAACATGAATGCTTACGTAGACGAGTTCATGGAAGCTCTTGAACCATTCATG 60
||||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||
Sbjct 27 ATGGCTTTAAACATGAATGGTTACATAGACGAGTTCACGAAAGCTCTTGAACCATTCATG 86
Query 61 AAGGTAACTTCA---TCTTCTTCTACTTCGAATTCATC-AAAT-C----CA--AAA-CCA 108
|||||||||||| ||||||||| |||| ||| || | | | || ||| |||
Sbjct 87 AAGGTAACTTCATCTTCTTCTTCTTCTTCTTCTTCTTCGTATTCCTTTTCATCAAACCCA 146
Query 109 TTAACTCCTAATTTCATCCCTAATAATGACCAAGTCTTACCGGTATCTAACCAAACCGGT 168
|||| ||| | | | ||||||| |||||| |||||||| ||||||||||||||||
Sbjct 147 AAAACT-TTAACTAC-T-AATAATAATAACCAAGCCTTACCGGAATCTAACCAAACCGGT 203
Query 169 CCGATTGGGCTAAACCAGCTCACTCCAACACAAATCCTCCAAATTCAGACAGAGTTACAT 228
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 204 CCGATTGGGCTAAACCAGCTCACTCCAACTCAAATCCTCCAAATTCAAACTGAGTTACAT 263
Query 229 CTCCGGCAAAACCAATCTCGTCGTCGCGCTGGTAGTCATCTTCTCACCGCTAAACCAACC 288
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 264 CTCCGGCAAAACCAACCTCGTCGTCGAGCTGGTAGTCATCTTCTCACCACTAAACCAACC 323
Query 289 -TCAATGAAGAAAATCGACGTAGCAACTAAACCGGTTAAACTATACCGAGGCGTAAGACA 347
| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 324 CT-AATGAAGAAAACCGACGTAGCAGCCAAACCGGTTAAACTATACCGAGGCGTAAGACA 382
Query 348 GA-GGCAATGGGGTAAATGGGTAGCTGAGATTCGGCTACCTAAAAACCGAACCCGGTTAT 406
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 383 -ACGGCAATGGGGTAAATGGGTAGCTGAGATTCGGTTACCTAAAAACCGAACCCGGTTAT 441
Query 407 GGCTCGGTACGTTCGAAACGGCTCAAGAAGCTGCATTAGCTTACGATCAAGCAGCTCATA 466
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 442 GGCTCGGTACGTTCGAAACGGCCCAAGAAGCTGCATTAGCTTATGATCAAGCTGCTCATA 501
Query 467 AGATCAGAGGAGACAACGCTCGTCTCAATTTCCCAGACATTGTTCGTCAAGGACACTATA 526
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 502 AGATCAGAGGAGACAACGCTCGTCTAAATTTCCCCGACATTGCTCGTCAAGGACACTATA 561
Query 527 AACAGATATTGTCTCCGTCTATCAACGCAAAGATCGAATCCATCTGCAATAGTTCTGATC 586
|||||| ||||||||| |||||||||||||||||||| || |||||| |||| |||||||
Sbjct 562 AACAGACATTGTCTCCTTCTATCAACGCAAAGATCGACTCAATCTGCCATAGCTCTGATC 621
Query 587 TTCCACTGCCTCAGATCGAG-AAACAGAACAAAACAGAGGAGGTGCTCTCTGGTTTT--T 643
|||| || |||||| || || ||||||||||||||||||||||||||||||| |||| |
Sbjct 622 TTCCTCTTCCTCAGCTC-AGGAAACAGAACAAAACAGAGGAGGTGCTCTCTGCTTTTCAT 680
Query 644 ----C----CA--AACCGGAGAAAGAACCGGAATTTGGGGAGATATACGGATGCGGATAC 693
| || |||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 681 TATACGGGTCATGAACCGGAGCAAGAACCGGAATTTGGGGAGATATACGGATCCGGGTTT 740
Query 694 TCGGGCTCATCTCCTGAGTCGGATATAACGTTGTTGGATTTCTCAAGCGACTGTGTGAAA 753
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 741 TCGGGCTCTTCTCCTGAGTCGGATATAACGTTGTTGGATTTCTCAAGCGACTGTATGAAA 800
Query 754 GAAGATGAGAGTTTCTTGATGGGTTTGCACAAGTATCCTTCTTTGGAGATTGATTGGGAC 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GAAGATGAGAGTTTCTTGATGGGTTTGCACAAGTATCCTTCTTTGGAGATTGATTGGGAC 860
Query 814 GCTATAGAGAAACTCTTCTGA 834
|||||||||||||||||||||
Sbjct 861 GCTATAGAGAAACTCTTCTGA 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5