BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65140.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951353 jgi|Araly1|951353|scaffold_803240.1 1834 0.0
> Ahg951353 jgi|Araly1|951353|scaffold_803240.1
Length=1151
Score = 1834 bits (993), Expect = 0.0
Identities = 1096/1146 (96%), Gaps = 6/1146 (1%)
Strand=Plus/Plus
Query 135 TTTTATATAAAATGGTGAGCCAAAACGTCGTCGTATCAGACGCCAAGACCGGGATCATAA 194
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TTTTA-ATAAAATGGTGAGCCAAAACGTCGTCGTATCAGACGCCAAGACCGGGATCATAA 69
Query 195 CGGTCTCTACAGTCTCTAACTCCTCTGTCTTTACTCCTACCGCTCAAAAACCACCGACTG 254
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 70 CGGTATCTACAGTCTCTAACTCCTCTGTCTTTACTCCTTCCGCTCAAAAACCACCGACTG 129
Query 255 CTCCTGGTTACATCTCAGTTTCCAAGAAAAAACTCCTCAAAAACCTTGAAATCAATGGAG 314
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CTCCTGGTTACATCTCAATCTCCAAGAAAAAACTCCTCAAAAACCTTGAAATCAATGGAG 189
Query 315 CTGATCAAAGTCAAAGACTTAACTCTTGGGTTGACTCCATGAGAGCTTCTTCTCCTACCC 374
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 190 -T--TCAAAGTCAAAGACTCAACTCTTGGGTTGACTCCATGAGAGCTTCTTCTCCTACCC 246
Query 375 ATCTCAAATCACTTTCCTCTTTCTCTTCCGAAGAAGAACACAATTCTTGGATCAAACGAC 434
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ATCTCAAATCACTTTCTTCTTTCTCTTCCGAAGAAGAACACAATTCTTGGATCAAACGAC 306
Query 435 ATCCATCAGCACTTAACATGTTCGAACGAATCATCGAAGAAGCAAGAGGAAAACAAATCG 494
||||||| || ||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 307 ATCCATCCGCGCTTGACATGTTCGAAAGAATCATCGAAGAAGCAAGAGGAAAACAGATCG 366
Query 495 TCATGTTTCTTGATTATGACGGTACTCTTTCTCCGATCGTGGATGATCCAGACAGAGCTT 554
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 367 TCATGTTTCTTGATTATGACGGTACTCTTTCTCCGATAGTCGATGATCCAGACAGAGCCT 426
Query 555 TCATGACTAGCAAGATGAGAAGAACAGTGaaaaaaaTGGCTAAGTGTTTTCCAACTTCCA 614
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 427 TCATGACTAGCAAGATGAGAAGGACAGTGAAAAAAATGGCCAAGTGTTTTCCAACTTCTA 486
Query 615 TAGTTACTGGTAGATGCATCGACAAGGTTTATAGCTTTGTGAAGCTAGCAGAACTGTATT 674
| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 487 TTGTTACTGGTAGATGCATAGACAAGGTTTATAGCTTTGTGAAGTTAGCAGAATTGTATT 546
Query 675 ATGCTGGAAGCCATGGGATGGATATTAAAGGCCCAACTAAAGGTTTCTCAAGATACAATA 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATGCTGGAAGCCATGGGATGGATATTAAAGGCCCAACTAAAGGTTTCTCAAGATACAATA 606
Query 735 AGGATAAACCATCCGTTCTTTACCAACCAGCCGGCGACTTTCTTCCCATGATCGATGAGG 794
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGGATAAACCATCAGTTCTTTACCAACCAGCCGGCGACTTTCTTCCCATGATCGATGAGG 666
Query 795 TTTATAAACAATTAGTGGAGAAAACCAAATCTACACCAGGAGCCAAAGTGGAGAACAACA 854
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 667 TTTATAAACAATTAGTGGAGAAAACCAAATCAACACCAGGAGCCAAAGTGGAGAACAACA 726
Query 855 AGTTCTGTCTTTCTGTGCACTTCCGTTGTGTTGACGAGAAGAAATGGAGCGAGCTGGCTT 914
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 727 AGTTCTGTCTTTCTGTGCACTTCCGTTGTGTCGACGAGAAGAAATGGAGCGAATTGGCTT 786
Query 915 CAAAAGTTCGGTCGGTGGTAAAGAACTATCCGACGTTGAAACTGTCTCAAGGTCGAAAGG 974
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 787 TAAAAGTTCGGTCGGTGGTCAAGAACTATCCGACGCTGAAACTGTCTCAAGGTCGAAAGG 846
Query 975 TTTTTGAAATCCGACCTATAATTAAATGGAACAAAGGCAAGGCTCTTGAGTTTTTGTTAG 1034
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 847 TTTTTGAAATCCGACCTATGATTAAATGGGACAAAGGCAAGGCTCTTGAGTTTTTGTTAG 906
Query 1035 AGTCACTCGGATTTGAAAACTGTAACGATGTATTTCCAATTTACATTGGTGATGATAAAA 1094
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 907 AGTCACTCGGATTTGAGAACTGTAACGATGTATTTCCGATTTACATTGGCGATGATAAAA 966
Query 1095 CCGATGAAGATGCATTTAAGCTACTACGAGG-GAGAGGACAAGGCTTTGGTATTCTTGTC 1153
|||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 967 CCGATGAAGATGCATTCAAGCTGCTACG-GGAGAGAGGACAAGGCTTTGGTATTCTTGTC 1025
Query 1154 TCCAAGTTCCCCAAAGACACCAGTGCGTCGTATTCTTTACAAGACCCACCTGAGGTGATG 1213
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1026 TCCAAGTTCCCCAAAGACACCAGTGCGTCGTATTCTTTGCAAGACCCACCTCAGGTGATG 1085
Query 1214 AATTTCTTGGGACGGTTGGTGGAGTGGAAACAGATGCAGCAATAAACGTGCAAGGGGCAA 1273
||||||||| |||||||||||| |||||||| ||||||||||||||||| |||| ||||
Sbjct 1086 AATTTCTTGCAACGGTTGGTGGACTGGAAACAAATGCAGCAATAAACGTGGAAGGCGCAA 1145
Query 1274 TGAAGT 1279
||||||
Sbjct 1146 TGAAGT 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5