BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65158.1
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918311 jgi|Araly1|918311|Al_scaffold_0008_3062 538 2e-152
> Ahg918311 jgi|Araly1|918311|Al_scaffold_0008_3062
Length=315
Score = 538 bits (291), Expect = 2e-152
Identities = 307/315 (97%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 196 ATGAGCCTCCGTCTTTACGACAGTTACGGTCAAGACGCGGTTATCTCCGATTTGGTGTCA 255
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAGCCTCCGTCTTTACGACAGTTACGGTCGAGACGCGGTTATCTCCGATTTGGTGTCA 60
Query 256 TGGGGAGGTTTAATGGGTCCATTTCATGACTATTTCGAGAGGGGCAATCTCGACATTTTC 315
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TGGGGAGGTTTAATGGGTCCGTTTCATGACTATTTTGAGAGGGGCAATCTCGACATTTTC 120
Query 316 AGTGGTTTAGGTTCTTGCCTCTCAGGTCCGGTTTGTGCAATGAATTTGACATCCGATGGC 375
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGGTTTAGGTTCTTGTCTCTCAGGTCCGGTTTGTGCAATGAATTTGACATCCGATGGC 180
Query 376 TCTGGTGATCATCACGGTTGGTATTGTAATTACGTGGAAGTGACCATGAGTGAGAGCCGT 435
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TCTGGTGATCATCACGGTTGGTATTGTAATTACGTGGAAGTGACGATGAGTGAGAGCCGT 240
Query 436 CGGAGAAGTTGTTCACAGGAGAAGTTTGAAGTGGAGCAATGGCTGGCTCGTGATGCTTCA 495
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGGAGAAGTTGTTCTCAGGAGAAGTTTGAAGTGGAGCAATGGCTGGCTCGTGATGCTTCG 300
Query 496 CCGTATGAGCTGTAG 510
||||||||||| |||
Sbjct 301 CCGTATGAGCTATAG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29888366928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5