BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65160.1
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496739 jgi|Araly1|496739|fgenesh2_kg.8__2555__AT5G65160.1 3051 0.0
> Ahg496739 jgi|Araly1|496739|fgenesh2_kg.8__2555__AT5G65160.1
Length=2154
Score = 3051 bits (1652), Expect = 0.0
Identities = 1911/2035 (94%), Gaps = 21/2035 (1%)
Strand=Plus/Plus
Query 1 GAAACGGAAGAATCTTCGTTCCTCTTTACCGTCCGGCCGAGAAAAGCCTAATCACATCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACGGAAGAATCTTCGTTCCTCTTTACCGTCCGGCCGAGAAAAGCCTAATCACATCTT 60
Query 61 TCTCCTCTATTCTTCTTTTTAAAACATGAGAtctctctctcttctcATCACCATTGATCT 120
||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCTTCTCTATTCCTCTTTTTAAAACATGAGA--TCTCTCTCTTCTCATCACCATTGATCT 118
Query 121 CTGGTTTTCAT-AATCTATTCTT-TGATTCTTATTCTATCTCTGAATTTTGATTTGTTCT 178
||||||||| | ||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 119 CTGGTTTTC-TAAATCTCTTCTTCTGATTCTTATTCTATTTCTGAATTTTGATTTGTTCT 177
Query 179 TCGGG-GGAGATAGGGTTTTAC-AATTCTC-AGGCCGGTTCTTGAGATGGAGGAGAACAC 235
| ||| || || |||||||| | ||||| | |||||||||||||||||||||||||||||
Sbjct 178 TTGGGAGG-GAGAGGGTTTT-CTAATTC-CGAGGCCGGTTCTTGAGATGGAGGAGAACAC 234
Query 236 GGCGGTGGCTGCGGCGGAGAGAAGATCAGGTTGTGGTTTATTGAGTGTAATGTTTGGTAG 295
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 235 GGCGGTGGCTGCGGCGGAGAGAAGATCAGGTTGCGGGTTATTGAGTGTAATGTTTGGTAG 294
Query 296 ACGTGGCTTGTGGTCCAAGAAATCTACCGCTGTCGATAACGGTAGCCAGAAAAGCACATC 355
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 295 ACGTGGCTTGTGGTCCAAGAAATCTACCGCGGCCGATAACGGTAGCCAGAAAAGCACATC 354
Query 356 TACGGCTGCGACCGCAACAAGCAACATTCAATTCACTAAATCTCCGGGCACCGAGTTAAA 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TACGGCTGCGACCGCCACAAGCAACATTCAATTCACTAAATCTCCGGGCACCGAGTTAAA 414
Query 416 GAAGCCGCGTGATGATCAGAAAGTTTCCGCTGAGCCAATCCAGAATAACAAGATCCAGAA 475
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAAGCCTCGTGATGATCAGAAGGTTTCCGCTGAGCCAATCCAGAATAACAAGATCCAGAA 474
Query 476 -CAACCAAAATCACAACCAGAGATCCGTAGTTCCATCAAAACCCTCGTCAAATCAGTACC 534
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 475 CCAA-CAAAATCACAACCAGAGATCCGTAGTTCCATCAAAACCCTCGTCGAATCAATACC 533
Query 535 CTAATAACCATCAATTAGGGACTTACGAGAATCACCAACGAAGTAGTTATAACAACAATA 594
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTAATAACCATCAATTAGGGAGTTACGAGAATCACCAACGAAGTAGTTATAACAACAATA 593
Query 595 GTAATAGTGTTGATCCATATCGAGGAGGAGGAGGACAGAGGAAAGTGCCAAGAGAAGCCA 654
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 594 GTAATAGCGTTGATCCATATC------GAGGAGGACAGAGGAAAGTGCCAAGAGAAGCCA 647
Query 655 TTGGTTTATCGGGTGAGCTTGAAAGCATGATCACGGATCATCAGAAAGCAAAAGGAACCA 714
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 TTGGTTTATCGGGTGAGCTTGAAAGCATGATTACGGATCATCAGAAAGCAAAAGGAACCA 707
Query 715 ATGGATTGGTTCGTGCATCTTCTAGCAATATAATGTTATATGGTAATCTTGGCAATTTGA 774
||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 708 GTGGATTGGTTCGTGCTTCTTCTAGCAATGTCATGTTATATGGTAATCTTGGCAATTTGA 767
Query 775 ATCAGACTGGACCTGTAACTGCGGGTGTAAATTACGGTAATAACAATGGATATGGCGTGA 834
||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 768 ATCAGACCGGACCAGTAACGGCTGGTGTAAATTACGGTAATAACAATGGATATGGCGTGA 827
Query 835 AGAGGACGACAATGGGGGCTGCAACGGCGACGACAACAAAGAGTCAAGATCAATCAGGAT 894
||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 828 AGAGGGCGACTATGGGGGATGCAACGGGGACGACAACAAAGAGTCAAGATCAATCAGGAT 887
Query 895 CTTTGTGTAGAGCAATCTCAACAAGAATGGATCCGGAAACTTTGAAGATCATGGGGAATG 954
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 888 CTTTGTGTAGAGCAATCTCAACACGAATGGATCCGGAAACGTTAAAGATCATGGGGAATG 947
Query 955 AAGATTACAAGAATGGGAATTTCGCAGAGGCTTTAGCATTGTATGATGCAGCCATTGCAA 1014
|||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 948 AAGATTACAAGAGCGGGAATTTTGCAGAGGCGTTAGCATTGTATGATGCTGCCATTGCGA 1007
Query 1015 TTGATCCAAACAAAGCTGCTTACCGTAGCAACAAGAGCGCGGCTTTGACCGCCCTAGGGA 1074
||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1008 TTGATCCCAACAAAGCTGCGTACCGTAGCAACAAGAGTGCGGCTTTGACCGCGCTAGGGA 1067
Query 1075 GAATCCTTGACGCGGTTTTTGAATGCAGAGAAGCAATCAGAATTGAGCCTCATTACCACA 1134
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1068 GAATCCTTGAAGCGGTTTTTGAATGCAGAGAAGCAATCAGAATTGAGCCTCATTACCATA 1127
Query 1135 GAGCACATCATAGGTTGGGTAACTTGTACCTCAGGTTAGGAGAAGTGGAGAAATCGATAT 1194
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GAGCACATCATCGATTGGGTAACTTGTACCTCAGGTTAGGAGAAGTGGAGAAATCGATAT 1187
Query 1195 ATCATTTCAAACATTCGGGTCCCGAAGCTGATCGTGAAGACATTGCAAAGGCGAAAACGG 1254
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1188 ATCATTTCAAACATTCGGGTCCAGAAGCTGATCGCGAAGACATTGCAAAGGCGAAAACGG 1247
Query 1255 TACAGACACATCTCAACAAATGCACAGAAGCTAAGAGATTACGAGATTGGAATGGTTTGA 1314
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TACAGACACATCTCAACAAGTGCACAGAAGCTAAGAGATTACGAGATTGGAATGGTTTGA 1307
Query 1315 TTACGGAGACAACAAACACAATCTCTTCAGGAGCTGATGCAGCCCCTCAGGTCTATGCAT 1374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TTACAGAGACAACAAACACAATCTCTTCAGGAGCTGATGCAGCCCCTCAGGTCTATGCAT 1367
Query 1375 TGCAAGCAGAAGCTTTGTTGAAGACACATAGACATCAAGAAGCTGATGATGCTTTGTCTA 1434
||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1368 TGCAAGCAGAAGCCTTGTTGAAGACCCATAGACATCAAGAAGCGGATGATGCACTGTCTA 1427
Query 1435 GATGTCCGGTTTTCGATATTGATGCTAGTACTAGGTACTACGGACCGGTCGGTTATGCTG 1494
||||||||||||||||| || | || ||||||||||| |||||||||||||||||||
Sbjct 1428 GATGTCCGGTTTTCGATGGGGACACCAGCACTAGGTACTATGGACCGGTCGGTTATGCTG 1487
Query 1495 GTTTCTTGGTCGTCCGTGCTCAGGTTCACTTAGCGTCTGGCAGATTCGACGAGGCGGTGG 1554
||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct 1488 GTTTCTTGGTCGTCCGTGCTCAGGTTCACTTGGCCTCTGGCAGATTCGACGAAGCAGTGG 1547
Query 1555 AGGCGATCCAACGCGCCGGGAAGCTGGACGGGAATAACCGAGAGGTGATTATGATTTCAC 1614
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1548 AAGCGATCCAACGCGCCGGAAAGCTGGACGGGAATAACCGAGAGGTGATGATGGTTTCAC 1607
Query 1615 GACGGGCACAAGCGGTGACTGAAGCTCGGTTTAAAGGAAACGAGCTGTTTAAATCTGGAC 1674
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
Sbjct 1608 GAAGGGCACAAGCGGTGACTGAAGCTCGATTTAAAGGAAACGAGCTGTTTAAAGCCGGGC 1667
Query 1675 GGTTCCAAGAGGCGTGCGCCGCTTATGGTGAGGGATTAGATCACGATCCACGAAACTCTG 1734
||||||| || |||||| ||||||||||||||| |||| ||||||||||||||||| |
Sbjct 1668 GGTTCCAGGAAGCGTGCATTGCTTATGGTGAGGGACTAGACCACGATCCACGAAACTCCG 1727
Query 1735 TTTTGCTCTGTAACCGCGCGGCTTG-TCGGTCAAAATTGGGTCAATTTGATAAATCTATA 1793
|||||||||| |||||||||||||| | |||||| ||| |||||||| |||||||||||
Sbjct 1728 TTTTGCTCTGCAACCGCGCGGCTTGCT-GGTCAAGATTAGGTCAATTCGATAAATCTATT 1786
Query 1794 GAGGATTGCACGGCGGCTCTCTCCGTCCGGCCGGGATATGGTAAGGCTCGCCTCAGAAGA 1853
||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1787 GAGGATTGCACGGCGGCGCTTTCCGTTCGGCCGGGATATGGCAAGGCTCGCCTCAGAAGA 1846
Query 1854 GCCGATTGTAACGCCAAGATCGAAAAGTGGGAATTAGCGGTGGGTGACTACGAGATATTG 1913
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1847 GCCGATTGTAACGCCAAGATCGAAAAGTGGGAATTAGCGGTGGGTGACTATGAGATATTG 1906
Query 1914 AAAAAGGAGTCGCCGGAGGATGAGCAAGTTATCAGAGGATTATCAGAGGCTCAACAACAA 1973
||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1907 AAAAAAGAGTCGCCGGAGGATGAGCAAGTTACCAGAGGATTAGCAGAGGCTCAACAACAA 1966
Query 1974 CTCATGAAACGTAGTGGACAAGACTCTTGAGAATTTTTCCGGTGAATAAAAACCA 2028
|||||||||||| ||||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 1967 CTCATGAAACGTCGTGGATAAGACTCTTGAGAAATTTTCCGGTGATTAAGAACCA 2021
Score = 121 bits (65), Expect = 3e-26
Identities = 84/92 (91%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 2115 ATGACAAATCGTGTGAATTCTTT-A---AT-TTTTATTTTTGGGTTTTGAATGATTAAAT 2169
||||||||| ||||||||||||| | || |||| |||||||| |||||||||||||||
Sbjct 2064 ATGACAAATTGTGTGAATTCTTTCATTTATATTTTTTTTTTGGG-TTTGAATGATTAAAT 2122
Query 2170 TGTTTGTATAGGAATGAGATTGTGGGAATACT 2201
||||||||||||||||||||||||||||||||
Sbjct 2123 TGTTTGTATAGGAATGAGATTGTGGGAATACT 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5