BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65165.1
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332733 jgi|Araly1|332733|fgenesh1_pm.C_scaffold_8002076 1380 0.0
Ahg952202 jgi|Araly1|952202|scaffold_45500003.1 623 8e-178
Ahg952201 jgi|Araly1|952201|scaffold_45500002.1 418 4e-116
> Ahg332733 jgi|Araly1|332733|fgenesh1_pm.C_scaffold_8002076
Length=930
Score = 1380 bits (747), Expect = 0.0
Identities = 871/932 (93%), Gaps = 4/932 (0%)
Strand=Plus/Plus
Query 6 ATGTCGTCTGTCTTGCGGTTGTTGGGGCGGAGAATCTGTAATCCAGCGGCGGAGAAAGTG 65
||| || ||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 1 ATGGCGACTGTCTTGCGGTTTTTAGGGCGTAGAATCTGCAATCCAGCGGCGGAGAAAGTA 60
Query 66 CGTTTGAGCAGTAGCCTAAGCG-GTGGTGGAGATTTTCCAATCTTAAATGGACATAAAGC 124
||||||||||||||| |||||| | || || |||||||| ||||||| || || |||||
Sbjct 61 CGTTTGAGCAGTAGCTTAAGCGAG-GGAGGTGATTTTCCGGTCTTAAAAGGCCAGAAAGC 119
Query 125 GGCTCAAGACTTATCCAAAGATACTCTAAAATCCCAAGACATAACGAAAGAGAAAGAAGG 184
|||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 120 GGCTCAAGACTTATCCAAAGATACTCTAAAGTCCCATGAAATAACAAAAGAGAAAGAAGG 179
Query 185 CCAACACAAAGAAGTTAAGAAGGAGTTCAAGATTTATAGATGGAATCCTGACAAGCCTAA 244
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 180 CCAACACAAAGAAGCTAAGAAGGAGTTCAAGATTTACAGATGGAATCCTGACAAACCTAA 239
Query 245 CTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATGGTTTT 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATGGTTTT 299
Query 305 GGACGTGCTGCAGAAGATAAAAGCAGAGGATGATGCCAGTTTGAGTTACAGAAGATCATG 364
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 GGACGTACTGCAGAAGATAAAAGCAGAGGAAGATGCGAGTTTGAGTTACAGAAGATCATG 359
Query 365 TAGAGAAGGGATATGTGGATCTTGTTCAATGAACATTGACGGTACTAACACTGTCGCATG 424
||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 360 TAGAGAAGGAATATGTGGATCTTGCTCGATGAACATCGACGGTACTAATACTGTCGCATG 419
Query 425 TCTTAAACCCATAAACCCAAACACGTCAAAGCCCACCATAATTACTCCATTGCCTCACAT 484
|||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 420 TCTTAAACCCATAAACCCCAACTCGTCGAAGCCCACCATAATTACTCCATTGCCTCACAT 479
Query 485 GTACGTCATCAAAGACCTAGTCGTCGACCTCACTAATTTTTACCAACAATACAAATCAAT 544
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 480 GTACGTCATCAAAGACCTAGTCGTCGACCTCACTAATTTTTATCAACAATACAAAGCAAT 539
Query 545 GGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGCGAACACCGGCAATCACC 604
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 540 GGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGTGAACACCGACAATCACC 599
Query 605 AAAAGACAGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTACCAC 664
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAAGACCGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTACCAC 659
Query 665 ATCATGTCCTTCTTATTGGTGGAACCCCGAGGAGTTTCCAGGACCTGCGGCTTTACTACA 724
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 660 ATCATGTCCTTCTTATTGGTGGAACCCTGAGGAGTTTCCAGGACCCGCGGCTTTACTACA 719
Query 725 AGCGTACCGTTGGATCAGCGATAGCCGCGATGAATACAGAGAAGAGAGGCTACAGGCAAT 784
|||||| ||||||||||| |||||||| ||||| | |||||||||| || ||||| ||
Sbjct 720 AGCGTATCGTTGGATCAGTGATAGCCGTGATGAGTTTGGAGAAGAGAGACTTCAGGCGAT 779
Query 785 AACTGAGAGTGAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCACTTG 844
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACTGAGAATCAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCACTTG 839
Query 845 TCCTAAAGGACTTAACCCAGCTAGTGCCATTTTGAAAATGAAGTCTAAGCATTTGCTCTC 904
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 840 TCCTAAAGGACTTAATCCAGCTAGTGCTATTTTGAAAATGAAGTCTAAGCATTTTCTCTC 899
Query 905 CGATCCG-TTAGTGAGAACAGAGAGTGTCTAG 935
||||||| || |||||||| |||||| |||||
Sbjct 900 CGATCCGGTT-GTGAGAACCGAGAGTCTCTAG 930
> Ahg952202 jgi|Araly1|952202|scaffold_45500003.1
Length=435
Score = 623 bits (337), Expect = 8e-178
Identities = 390/416 (94%), Gaps = 2/416 (0%)
Strand=Plus/Plus
Query 541 CAATGGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGCGAACACCGGCAAT 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 21 CAATGGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGTGAACACCGGCAAT 80
Query 601 CACCAAAAGACAGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTA 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CACCAAAAGACCGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTA 140
Query 661 CCACATCATGTCCTTCTTATTGGTGGAACCCCGAGGAGTTTCCAGGACCTGCGGCTTTAC 720
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 141 CCACATCATGTCCTTCTTATTGGTGGAACCCTGAGGAGTTTCCAGGACCCGCGGCTTTAC 200
Query 721 TACAAGCGTACCGTTGGATCAGCGATAGCCGCGATGAATACAGAGAAGAGAGGCTACAGG 780
|||||||||| ||||||||||| |||||||| ||||| | |||||||||| || ||||
Sbjct 201 TACAAGCGTATCGTTGGATCAGTGATAGCCGTGATGAGTTTGGAGAAGAGAGACTTCAGG 260
Query 781 CAATAACTGAGAGTGAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCA 840
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CGATAACTGAGAATCAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCA 320
Query 841 CTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATTTTGAAAATGAAGTCTAAGCATTTGC 900
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 321 CTTGTCCTAAAGGACTTAATCCAGCTAGTGCTATTTTGAAAATGAAGTCTAAGCATTTTC 380
Query 901 TCTCCGATCCG-TTAGTGAGAACAGAGAGTGTCTAGCTTCAACATGACTTGGACCG 955
||||||||||| || |||||||| |||||| |||||| | ||||||||| ||||||
Sbjct 381 TCTCCGATCCGGTT-GTGAGAACCGAGAGTCTCTAGCCTGAACATGACTCGGACCG 435
> Ahg952201 jgi|Araly1|952201|scaffold_45500002.1
Length=349
Score = 418 bits (226), Expect = 4e-116
Identities = 277/302 (92%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 1 AGAGAATGTCGTCTGTCTTGCGGTTGTTGGGGCGGAGAATCTGTAATCCAGCGGCGGAGA 60
|||||||| || ||||||||||||| || ||||| |||||||| ||||||||||||||||
Sbjct 19 AGAGAATGGCGACTGTCTTGCGGTTTTTAGGGCGTAGAATCTGCAATCCAGCGGCGGAGA 78
Query 61 AAGTGCGTTTGAGCAGTAGCCTAAGCG-GTGGTGGAGATTTTCCAATCTTAAATGGACAT 119
|||| ||||||||||||||| |||||| | || || |||||||| ||||||| || ||
Sbjct 79 AAGTACGTTTGAGCAGTAGCTTAAGCGAG-GGAGGTGATTTTCCGGTCTTAAAAGGCCAG 137
Query 120 AAAGCGGCTCAAGACTTATCCAAAGATACTCTAAAATCCCAAGACATAACGAAAGAGAAA 179
||||||||||||||||||||||||||||||||||| | ||| || ||||| |||||||||
Sbjct 138 AAAGCGGCTCAAGACTTATCCAAAGATACTCTAAAGTACCATGAAATAACAAAAGAGAAA 197
Query 180 GAAGGCCAACACAAAGAAGTTAAGAAGGAGTTCAAGATTTATAGATGGAATCCTGACAAG 239
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 198 GAAGGCCAACACAAAGAAGCTAAGAAGGAGTTCAAGATTTACAGATGGAATCCTGACAAA 257
Query 240 CCTAACTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CCTAACTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATG 317
Query 300 GT 301
||
Sbjct 318 GT 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5