BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65166.1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497430 jgi|Araly1|497430|fgenesh2_kg.455__1__AT5G65166.1          254    2e-67
  Ahg496741 jgi|Araly1|496741|fgenesh2_kg.8__2557__AT5G65166.1         254    2e-67


> Ahg497430 jgi|Araly1|497430|fgenesh2_kg.455__1__AT5G65166.1
Length=186

 Score =  254 bits (137),  Expect = 2e-67
 Identities = 172/187 (92%), Gaps = 9/187 (5%)
 Strand=Plus/Plus

Query  1    ATGAAATTCAAACAAGCAGAGCATTCAACAAAAAGAGTATTTTTCAACGAAGAAGGA--T  58
            |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||  |
Sbjct  1    ATGAAATTCAAACAAGCAGAGCATTCGAC-AAAAGAGTATTTTTCAATGAAGAAGGATGT  59

Query  59   GTGTG----T-T-ATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT  112
            |||||    | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GTGTGATACTGTGATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT  119

Query  113  CACCTCTCTTTCAGATTATTGGATCGTTGACTTTTCTGTTGCAAGATTTGTCTGGGTTTG  172
            ||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct  120  CACATCTCTTTCAGATTATTGGATCGTTGACTATCCTGTTGCAAGATTTGTCTGGTTTTG  179

Query  173  TTTATAA  179
            |||||||
Sbjct  180  TTTATAA  186


> Ahg496741 jgi|Araly1|496741|fgenesh2_kg.8__2557__AT5G65166.1
Length=186

 Score =  254 bits (137),  Expect = 2e-67
 Identities = 172/187 (92%), Gaps = 9/187 (5%)
 Strand=Plus/Plus

Query  1    ATGAAATTCAAACAAGCAGAGCATTCAACAAAAAGAGTATTTTTCAACGAAGAAGGA--T  58
            |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||  |
Sbjct  1    ATGAAATTCAAACAAGCAGAGCATTCGAC-AAAAGAGTATTTTTCAATGAAGAAGGATGT  59

Query  59   GTGTG----T-T-ATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT  112
            |||||    | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GTGTGATACTGTGATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT  119

Query  113  CACCTCTCTTTCAGATTATTGGATCGTTGACTTTTCTGTTGCAAGATTTGTCTGGGTTTG  172
            ||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct  120  CACATCTCTTTCAGATTATTGGATCGTTGACTATCCTGTTGCAAGATTTGTCTGGTTTTG  179

Query  173  TTTATAA  179
            |||||||
Sbjct  180  TTTATAA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6912075241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5