BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65170.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496742 jgi|Araly1|496742|fgenesh2_kg.8__2558__AT5G65170.1 1485 0.0
> Ahg496742 jgi|Araly1|496742|fgenesh2_kg.8__2558__AT5G65170.1
Length=1152
Score = 1485 bits (804), Expect = 0.0
Identities = 1069/1188 (90%), Gaps = 54/1188 (5%)
Strand=Plus/Plus
Query 1 tctctctctctgaacttctacctcttcctctctgtgtctctGCCATGGAATCCGGCAATA 60
|||||| |||||||| |||||||||||||||| | |||||| |||||| ||||||||||
Sbjct 1 TCTCTCCCTCTGAACCACTACCTCTTCCTCTCTCTATCTCTGACATGGATTCCGGCAATA 60
Query 61 GTAGTAGCATGCAATCCTCAAGCGGCGGTGGTGGTGGAGGAGATCAAGAAGAGTACGACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGTAGCATGCAATCCTCAAGCGGCGGTGGTGGTGGAGGAGATCAAGAAGAGTACGACT 120
Query 121 CACGCGCCGATCAATCAATTTCTGCTTTATTTAACCacaacaacaacaacaacaacCCAA 180
||||||||||||||||||| |||||||||||| | || | ||||||||||| | |||
Sbjct 121 CACGCGCCGATCAATCAATCTCTGCTTTATTT-A--AC--C-ACAACAACAAC-A--CAA 171
Query 181 CCACCGTCTCCCCCAACATCGCTGTTCCAACACAGCTTGACGCTCTCATAGCTAACTACT 240
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 172 CCACCGTCTCCTCCAACATCGCCGTTCCAACACAGCTTGACGCTCTCATAGCTAACTATT 231
Query 241 TCAACACTTCTTGGTCAGCGGATAATCCTCTATGGTCTACAACGGCTACGCAGCCCACCG 300
|||||| | |||||||| |||||||| |||| ||||| ||||||||||| |||||||||
Sbjct 232 TCAACAGTGCTTGGTCAACGGATAATTCTCTCTGGTCGACAACGGCTACAAAGCCCACCG 291
Query 301 ATGGCTCTAGACCAGTACCACCGCCGATTTCGTCAGAACAAGTCTTCTTCACAAACCCAC 360
| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 292 AGGGCTCAAGACCAGTACCACCGCCGATCTCATCAGAACAAGTCTTCTTCACAAACCCAC 351
Query 361 TTCAACAAAATCTGAGAACAGTT-----C-CTAACACAAACACAACTAGTCCCATTTGTT 414
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 352 TTCAACAAAATCTGAGAACAGTTCCAAACACAAACACAAACACAACTAGTCCCATTTGTT 411
Query 415 CCGTCCCAACCGACAAGAAAAACGGTCTTGCGACAACACGGAATCCAAAGAAGAGATCTC 474
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 412 CCGTCCCAACCGACAAGAAAAACGGTCTTGCGACAACACGAAATCCAAAGAAGAGATCTC 471
Query 475 GAGTCTCGAGACGAGCGCCTACGACTGTTTTGACCACCGACACATCCAACTTCAGAGCCA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 472 GAGTCTCGAGACGAGCGCCTACGACTGTTTTGACCACCGACACATCCAACTTTAGAGCCA 531
Query 535 TGGTTCAAGAATTCACGGGTAATCCTTCAACTCCTTTCACCGGATTATCTTCATC-T-T- 591
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct 532 TGGTTCAGGAATTCACCGGTAATCCTTCAACTCCTTTCACCGGATTATCGTCATCCTCTC 591
Query 592 -TT--CCAAGATCACGATTTGATCTCTTCGGTTCTTCTTCTTCTTCATCCTCACGACCCA 648
|| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 592 CTTTTCCAAGATCAAGATTTGATATCTTCGGTTCTTCTTCTTC---ATCCTCACGACCCA 648
Query 649 TGAAACCCTTTCCTCACAAACTCATCTCTCCATCGACGTTGAATCATCATTACCTTCCTC 708
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 649 TGAAACCCTTTCCTCACAAACTCATCTCTCCATCGACGGTGAATAATCATTACCTTCCTC 708
Query 709 CTTCTTCAGAGTACCATCATCATCATCAGCATCAGAATCTTCTCCTTAATATGAACACGC 768
||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 709 CTTCTTCAGAGTACCATCATCATCAGCA--A-CAGAATCTTCTCCTTAATATGAACACAC 765
Query 769 CAAATATCT-CAAACCCTTTTCTCAACAACTCTT-TAACG-GATCAAC-CGAAACCCTCG 824
||| || | ||||||||||||||| |||| ||| || | || || ||||||| |||
Sbjct 766 AAAACAT-TGCAAACCCTTTTCTCAGCAAC-CTTCTAT-GTGAA-AAGTCGAAACCTTCG 821
Query 825 AGCTTGAGAACGAGTAATGGTTTTGGACACGTGGACGTTGGAACAAACTTTGAGGGGCTT 884
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 822 AGCTTGAGAACGAGTAATGGTTTTGGACACGTTAACGTTGGAACAAACTTTGAGGGGCTG 881
Query 885 CACAACATTATCGTCTCTTCTTCATCGTCGATGACACAGCCAACCCTAAATACTATCCAT 944
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 882 CACAACATTATCGTCTCTTCATCATCATCGATGACACAGCCAACCCTAAATACTATCCAT 941
Query 945 GGACCAGAAAAGAGTACTGAAGCCGAAAATGATAATAATATGCT-AAGATCCATCAATGG 1003
||| |||| |||| ||| ||||| ||| |||||||| || | || ||||||||||||||
Sbjct 942 GGATCAGACAAGAATACCGAAGCAGAACATGATAATGATCT-CTTAAGATCCATCAATGA 1000
Query 1004 TA-ATGATCAACCCATGGTCCAAAGATCCGATGGTTACACACAACCTGGTGCTTCTGGAT 1062
| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1001 -AGATGATCAATCCATGGTGCAAAGATCGGATGGTTACACACAACCTGGTGCTTCTGGAT 1059
Query 1063 CCGAGAATAATCTATCGGCCGTGAGAAGTGAAGGTATGGTGGAATTATCTTGGATCTCTT 1122
| | || || |||||| |||| |||||||||||||||| ||||||||||
Sbjct 1060 C-G-GA----------GG---TGAGAAATGAATGTATGGTGGAATTATCATGGATCTCTT 1104
Query 1123 CTTCTGATTAGATGCATCTAACATTTTTACATTATGGTCGTATTTATT 1170
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1105 CTTCTGATTAGATGCATCTAAAACTTCTACATTATGGTCGTATTTATT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5