BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65180.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496743 jgi|Araly1|496743|fgenesh2_kg.8__2559__AT5G65180.1 2706 0.0
Ahg487831 jgi|Araly1|487831|fgenesh2_kg.6__965__AT5G10060.1 811 0.0
> Ahg496743 jgi|Araly1|496743|fgenesh2_kg.8__2559__AT5G65180.1
Length=1819
Score = 2706 bits (1465), Expect = 0.0
Identities = 1714/1830 (94%), Gaps = 33/1830 (2%)
Strand=Plus/Plus
Query 1 GTAAGAAAAAGGAGAAA-T--TAATGGCAGACGGCGTTAGGACAAAGAAAAA-GAGAACG 56
||||||||||| ||||| | ||||||||||||||||||||||||||||||| || ||||
Sbjct 1 GTAAGAAAAAGTAGAAATTAATAATGGCAGACGGCGTTAGGACAAAGAAAAAGGA-AACG 59
Query 57 CCTTTCTAGGGTTTGGTTTAT-GAACGCTCCGCCGTAAGAATTGTCCTCCGCCGCCGCGT 115
||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||
Sbjct 60 CCTTTCTAGGGTTTGGTTTATGGAA-GCTCCGCCGTAAGATTTGTTCTCCGCCGCCGCGT 118
Query 116 TTTCCCGTCGATTCAGAACAGAAGGATTATTGCTTTTGCCAATCTGTATCAATATCCGTT 175
||| ||||||||||||||| || |||| || |||| |||||||||||||||||||| ||
Sbjct 119 TTT--CGTCGATTCAGAACAAAAAGATTCTTACTTTCGCCAATCTGTATCAATATCCATT 176
Query 176 TGATTATCCTTGTAATTTCGTGTAAAAACCATTCAAGG-TTTCAGCTTCTT-CCCTCGTT 233
||||||||||| ||| |||||||||||||||| ||||| |||||||||||| ||| | ||
Sbjct 177 TGATTATCCTTCTAA-TTCGTGTAAAAACCATACAAGGTTTTCAGCTTCTTCCCCCCTTT 235
Query 234 CTT-TAGGGTTTAGATTTGATTTGGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 292
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GTTCTAGGGTTTTGATTTGATTTTGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 295
Query 293 TGATTGATAACCTCGCTAAGCTCAACAGCACTCAACAATCCATCCAAACTTTGTCACAGT 352
|||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 296 TGATTGATAAGCTCGCCAAGCTCAACAGCACTCAGCAATCCATCCAAACTCTGTCACAGT 355
Query 353 GGTGTATAGTCCATCGTAGTGAAGCTGAGCTGGTTGTTACGACATGGGAGAAACAGTTTC 412
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 GGTGTATAGTCCATCGTAGTGAAGCTGAGTTGGTTGTTACGACATGGGAGAAACAGTTTC 415
Query 413 ACAGTACACAGATAGGTCAGAAAGTGCCTCTCTTGTACCTTGCTAATGACATTCTTCAGA 472
|||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 416 ACAGTACAGAGATTGCTCAGAAAGTGCCTCTCTTGTACCTTGCTAACGACATTCTTCAGA 475
Query 473 ACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTGGTGCTC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTGGTGCTC 535
Query 533 TCAAAGATATTGTTTCCTTGGGAGATGACTATGGAAAAGGCGTGGTTTCGCGATTGGTTA 592
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 536 TCAAAGATCTTGTTTCCTTGGGAGATGACTATGGAAAAGGCGTTGTTTCACGATTGGTTA 595
Query 593 ATATATGGGAAGAGAGAAGAGTCTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGC 652
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 596 ATATATGGGAAGAGAGAAGAGTCTTTGGGTCCCGTTCAAAGAGTCTTAAAGATGTAATGC 655
Query 653 TCTCAGAAGAAGCTCCACCACCACTTGATGTCAGTAAAAAGCGATTTCGGGGATCTAAAT 712
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 656 TCTCAGAAGAAGCTCCTCCACCACTTGATGTCAGTAAAAAGCGATTACGGGGATCTAAAT 715
Query 713 CTGCAAAACGAGATTCAAAATCTACCAAAACGAAATTATCAAGTGGAGGTGTGTCCGAGA 772
|||| |||||||||||||||||| |||| | ||||||| ||| |||||||||| ||||||
Sbjct 716 CTGCGAAACGAGATTCAAAATCTGCCAAGATGAAATTAACAAATGGAGGTGTGACCGAGA 775
Query 773 AGATAGTATCTGCATTCAATTTGGTTCGTGCAGAGAACTCAAATGAAGAGACAGAGATGA 832
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 AGATAGTATCTGCATTCAATTTGGTTAGTGCAGAGAACTCAAATGAAGAGACAGAGATGA 835
Query 833 ACAAATGCAAGTCTGCCGTTAGACGTATCAGAAAGATGGAGAAAGATGTTGAAGATGCTT 892
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 836 ACAAATGCAAGTCTGCCGTTAGACGTATTAGAAAGATGGAGAAAGATGTTGAAGATGCCT 895
Query 893 GCTCCACTGCAAAAGACCCGAGGA-AAGAATCATTGGCAAAAGAATTGGAAGAGGAAGAA 951
|||||||||||||||||||||| | || ||||||||||||||||| ||||||| ||||||
Sbjct 896 GCTCCACTGCAAAAGACCCGAGTAGAA-AATCATTGGCAAAAGAACTGGAAGAAGAAGAA 954
Query 952 AACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTC 1014
Query 1012 GTAAATCATCTTAGGGAAGCGCTACGGGAACAGGAATCTGAATTGGAGAATCTTCAATCT 1071
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1015 GTAAATTATCTTAGGGAAGCGCTACGCGAACAGGAATCTGAATTGGAGAATCTTCAATCT 1074
Query 1072 CAGATACAGGTAGCACAAGAACAAACCGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1131
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 CAGATACAGGTAGCACAAGAACAAACTGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1134
Query 1132 AACGAAACACCGGTTAACAATAACAACGGAACATCTGGTCAATCAGCGAAAATCACTCCT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AACGAAACACCGGTTAACAATAACAACGGAACATCTGGTCAATCAGCGAAAATCACTCCT 1194
Query 1192 GCCTCAATCGCTGCAATGGCGGAAATGCTAACCTCATCAACAAACTCATCAATGATTATG 1251
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1195 GCCTCAATCGCTGCCATGGCGGAAATGCTAACTTCATCAACAAATTCATCAATGATTATG 1254
Query 1252 CATTCTGTCCTCTCTTCATTTGCAGCCGAAGCTACACAAACTTCTGGTCTAACCAAATCA 1311
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1255 CATTCTGTCCTGTCTTCATTTGCAGCTGAAGCTACACAGACTTCTGGTCTAACCAAATCA 1314
Query 1312 AACACCTCAGACACAAATGCATTTGTTGTTCCTCCAAATCCTCAGCAGTATCACATAATA 1371
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AACAGCTCAGACACAAATGCATTTGTTGTTCCTCCAAATCCTCAGCAGTATCACATAATC 1374
Query 1372 CCAAATCCAGCCGCATCACAACAGTTTC--C-TTATGGATTTGGTAACATTCCATTAATG 1428
||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||
Sbjct 1375 CCAAATCCAGCCGCATCGCAACAGTTTCTACCTTATGGGTTTGGTAACATTCCATTAATG 1434
Query 1429 CCACCTGGAGCACTGCCGCCACCGCCGCCTGGAACGTTGCCGCCGCATATGATGAATAAT 1488
|| ||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||||
Sbjct 1435 CCTCCTGGAGCACTTCCGCCACCGCC---TGGAGTGTTACCGCCGCATATGATGAGTAAT 1491
Query 1489 AACAACCAACCAAATGCAGCTCAGCAACAAGCGCAACAA---GGTCAGAGTTTTCATCCA 1545
|| || |||||||| ||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1492 AATAATCAACCAAACGCAGCTCAGCAACAATCGCAACAACAAGGTCAGAGTTTTCAGCCA 1551
Query 1546 CCGGGTATGATGTATTTTGGACCTCCACACCATTCTTAAGGTTAGTaaaaa-caaaccaa 1604
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1552 CCGGGTATGATGTATTTTGGACCTCCACACCATTCTTAAGGTTAGTAAAAAACAAATAAA 1611
Query 1605 aaaaT-CCAATTAGTTCTAGTATTAGATAGTTTCTGACCCACTTTATTTTATTTCA-TGT 1662
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1612 AAAATTCCAATTAGTTCTAGTTTTAGATAGTTTCTGACCCACTTTATTTTATTTGAATGT 1671
Query 1663 AACGCATATTGTAGAAAGTAGAAACGAGATCTTTTGTCTTACAAATCTT-GTACCTTGAG 1721
|| |||| | ||||||| | ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1672 AATGCAT-T-GTAGAAAATGGAAACGAGATCTTTTTTCTTACAAATCTTTGTACCTTGAG 1729
Query 1722 CTGTTTAGTCAATTTTTCTTCTTTGTAACAT-A--GTTAGACTTCTATTGTGTATCTGCG 1778
||||||||| |||||| |||||||||||||| | ||||||||| |||||| |||||||
Sbjct 1730 CTGTTTAGTAAATTTTACTTCTTTGTAACATCATAGTTAGACTTATATTGTTTATCTGCT 1789
Query 1779 TTACATTTATATCTAGTATGCGTTTGTTTC 1808
|||||||||||| |||||||| ||||||||
Sbjct 1790 TTACATTTATATTTAGTATGCATTTGTTTC 1819
> Ahg487831 jgi|Araly1|487831|fgenesh2_kg.6__965__AT5G10060.1
Length=1972
Score = 811 bits (439), Expect = 0.0
Identities = 745/890 (84%), Gaps = 32/890 (4%)
Strand=Plus/Plus
Query 261 TGGGATGAGTAGTCCGTTCAGTGAAGAGATACTGATTGATAACCTCGCTAAGCTCAACAG 320
||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||| ||
Sbjct 310 TGGGATGAGTAGTGTGTTCAGTGAACAGATCCTGATTGATAAGCTCGCTAAGCTCAATAG 369
Query 321 CACTCAACAATCCATCCAAACTTTGTCACAGTGGTGTATAGTCCATCGTAGTGAAGCTGA 380
||||||||| | |||| ||||| ||||||| ||||||||| || |||| | |||||||
Sbjct 370 CACTCAACAGTGCATCGAAACTCTGTCACATTGGTGTATATTCAATCGGACCAAAGCTGA 429
Query 381 GCTGGTTGTTACGACATGGGAGAAACAGTTTCACAGTACACAGATAGG-TCAGAAAGTGC 439
|| | ||||||||||||||||||||||||||||||||| |||| || ||||||||| |
Sbjct 430 ATTGATCGTTACGACATGGGAGAAACAGTTTCACAGTACAGAGAT-GGCTCAGAAAGTCC 488
Query 440 CTCTCT-TGTACCTT-GCTAATGACATTCTTCAGAACAGCAAGCGTCAGGGTAATGAGTT 497
|||| | |||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 489 CTCT-TATGTA-TTTGGCTAATGATATTCTTCAGAACAGTAAGCGTCAGGGTAATGAGTT 546
Query 498 TGTGCAAGAGTTCTGGAAAGTTCTCCCT-GGTGCTCTCAAAGATATTGTTTCCT-TGGGA 555
||||||||||||||||| ||||| ||| | ||| | ||||| ||||||| || |||
Sbjct 547 CGTGCAAGAGTTCTGGAATGTTCTTCCTAAG-GCTGTTAAAGACATTGTTT-CTCAAGGA 604
Query 556 GATGACTATGG-AAAAGGCGTGGTTTCGCGATTGGTTAATATATGGGAAGAGAGAAGAGT 614
||||| ||||| |||| |||| || || || ||||| || ||||||||||| ||||||||
Sbjct 605 GATGATTATGGCAAAA-GCGTTGTCTCACGTTTGGTCAAGATATGGGAAGAAAGAAGAGT 663
Query 615 CTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCTCTC-AGAAGAAGCTCCACCA- 672
|||||||||||||||||||||||||||||||||||||| | |||||| | ||| ||
Sbjct 664 GTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGCT-TGGAGAAGATGTTCC-CCTG 721
Query 673 CCACTTGATGTCAGTAAAAAGCGATTTCGGGGATCTAAATCTGCAAAACGAGATTCAAAA 732
||||||||| |||| |||||||| | ||| ||||| | ||||| |||||| |||||||||
Sbjct 722 CCACTTGATATCAGCAAAAAGCGGTCTCGCGGATCCAGATCTGGAAAACGGGATTCAAAA 781
Query 733 TC-TACCAAAACGAAATTATCA--A-GTGGAGGTGTGTCCGAGAAGATAGTATCTGCAT- 787
|| | ||| | ||||||||||| | ||||||||||| | |||||||||| ||| ||||
Sbjct 782 TCGT-CCAGAGCGAAATTATCATCAAGTGGAGGTGTGGCTGAGAAGATAGCATCAGCATA 840
Query 788 TCAATTTGGTTCGT-GCAGAGAACTCAAATGAAGA-GACAGAGATGAACAAATGCAAGTC 845
||| ||||||| || || || |||||||||||||| | | |||||||| ||||| |||||
Sbjct 841 TCA-TTTGGTT-GTTGCCGAAAACTCAAATGAAGAAG-CTGAGATGAATAAATGTAAGTC 897
Query 846 TGCCGTTAGACGTATCAGAAAGATGGAGAAAGATGTTGAAGATGCTTGCTCCACTGCAAA 905
|| |||| ||| ||||| ||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 898 CGCAGTTAAACGAATCAGGAAGATGGAGAAAGATGTTGAAGAAGCCTGCTCTACTGCTAA 957
Query 906 AGAC--CC-GAGGA-AAGAATCATTGGCAAAAGAATTGGAAGAGGAAGAAAACATTCTGA 961
|||| || || || || |||| ||||| |||||||||||||| |||||| || || |||
Sbjct 958 AGACAACCCGAAGAGAA-AATCTTTGGCGAAAGAATTGGAAGAAGAAGAATACCTTTTGA 1016
Query 962 GACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTCGTAAATCATC 1021
|||||| | ||||||||||||||||||| ||| |||||| || || || || || || |
Sbjct 1017 GACAATGTATTGAGAAACTTAAATCTGTCCAAGGAAGTAGAACTTCCCTTGTGAACCAGC 1076
Query 1022 TTAGGGAAGCGCTACGGGAACAGGAATCTGAATTGGAGAATCTTCAATCTCAGATACAGG 1081
||| || || |||| ||||||||||| ||| |||| |||||| || ||||||| ||||
Sbjct 1077 TTAAAGATGCATTACGCGAACAGGAATCCGAACTGGACAATCTTAAAGCTCAGATTCAGG 1136
Query 1082 TAGCACAAGAACAAACCGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1131
| |||| ||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1137 TCGCACTAGAACAAACAGAGGAAGCCCAAAACATGCAGAAACGGCTTAAT 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5