BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65200.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496745 jgi|Araly1|496745|fgenesh2_kg.8__2561__AT5G65200.1 2494 0.0
> Ahg496745 jgi|Araly1|496745|fgenesh2_kg.8__2561__AT5G65200.1
Length=1848
Score = 2494 bits (1350), Expect = 0.0
Identities = 1579/1690 (93%), Gaps = 14/1690 (1%)
Strand=Plus/Plus
Query 193 ACAAGAACAACAACCTCCGGTCGAATTTCTCTGTCCGATTTCAAAATCAGTAATGTCTGA 252
|||| ||||| || ||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 165 ACAACAACAAGAAGCTCCGGTCGAATTCCTCTGTTCTATTTCAAAATCAGTAATGTCTGA 224
Query 253 CCCTGTTGTTGTCTCTTCCGGTCAAACCTTCGAACGTGTCTGTGTTCAAGTCTGTCGCGA 312
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CCCTGTTGTTGTATCTTCCGGTCAAACCTTCGAACGTGTCTGTGTTCAAGTCTGTCGCGA 284
Query 313 CCTCAACTTTATCCCCAAACT---CAACGACGACGAAGAATCTCTACCCGATTTCTCCAA 369
||| |||||| |||||||||| |||||||||||| || |||| |||||||||||||||
Sbjct 285 CCTAAACTTTCTCCCCAAACTCAACAACGACGACGACGATTCTCAACCCGATTTCTCCAA 344
Query 370 CATCATCCCTAACCTAAACATGAAATCAACAATCGATACTTGGTGCGACACCGTCGGCGT 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 345 CATCATCCCTAACCTAAACATGAAATCAACAATCGATACTTGGTGCGACACCGTTGGCGT 404
Query 430 CTCACGTCCTCAGCCACCTGATTACTCCACCGTCGAGAGAATTTTACGGCAACAGATGCC 489
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 405 CTCTCGTCCTCAGCCACCTGATTACTCCGCCGTCGAGAGAATTTTACGGCAACAGATGCC 464
Query 490 TCCACCGGACGTCGAGATTCGTGTCTCCGAGCAAGAGCTTCTCAGAGCTGTAGCTCACCG 549
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 465 TCCGCCGGACGTTGAGATTCGTGTCTCCGAGCAAGAGCTTCTCAGTGCTGTAGCTCACCG 524
Query 550 AGCTCCGATGATAATTCACCACGCTGATTCTGAACTCATGGGAAGGAGAGATTTCAACAA 609
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AGCTCCGATGATTATTCACCACGCTGATTCTGAACTCATGGGAAGGAGAGATTTCAACAA 584
Query 610 CTCCACGACCTCTTCTGATGAATCTGTAATCGTTGCTCACAGTCCATTCACTCCTCTTCC 669
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 585 CTCCACGACCTCCTCTGATGAATCTGTAATCGTTGCTCAGAGTCCTTTCACTCCTCTTCC 644
Query 670 TTTAACAACTA-GACCCGCTTGCTTCTCTCCATCTCCATCATCTTCTTCCTCCGAAATCG 728
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTTAACAAC-ACGACCCGCTTGCTTCTCTCCATCTCCATCATCTTCTTCCTCCGAAATCG 703
Query 729 AAACCCTAACGCACCACACTTTCTTCTCTAATTCTACTTCCACCGCCACAGAAGAGGACG 788
||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 704 AAACCCTAACGCATCACAATTTCTTCTCTAGTTCAACTTCCACCGCCACAGAAGCGGACG 763
Query 789 AAGTGATTTACAACAAGCTTAAGAGCAGTGAGATTTTTGATCAAGAGCAAGGTTTGATTA 848
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 764 AAGAGATTTACAACAAGCTTAAGAGCAGTGAGATTTTCGATCAAGAGCAAGGTTTGATTA 823
Query 849 TGATGAGGAAGATGACTCGTACTAATGATGAAGCTAGGGTTTCGCTTTGTTCTCCTCGGA 908
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 824 TGATGAGGAAGATGACTCGTACTAAAGATGAAGCTAGGGTTTCGCTTTGTTCTCCTCGGA 883
Query 909 TTCTTTCTTTGTTGAAGAATATGATTGTTTCGAGATACAGTTTAGTGCAGACGAACGCGT 968
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 884 TTCTTTCTCTGTTGAAGAACATGATTGTTTCGAGATACAGTTTAGTGCAGACGAATTCGT 943
Query 969 TAGCGTCGCTTGTGAATCTGTCTTTGGATAAGAAGAACAAATTGACGATTGTTCGGTTAG 1028
|||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 944 TAGCTTCGCTTGTGAATCTATCTTTGGATAAGCAGAACAAATTGACGATTGTTCGGTTAG 1003
Query 1029 GATTTGTTCCGATTTTGATCGATGTTCTGAAGTCGGGGTCTAGAGAAGCTCAAGAACACG 1088
|||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct 1004 GATTTGTTCCGATTTTGATCGATGTTTTGAAATCAGGATCTAGAGAAGCTCAAGAACACG 1063
Query 1089 CAGCTGGAACAATCTTTAGTCTTTCTCTTGAAGATGATAATAAAATGCCTATTGGAGTTT 1148
|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1064 CAGCGGGATCAATCTTTAGTCTTTCTCTTGAAGATGATAATAAAATGCCGATTGGTGTTT 1123
Query 1149 TAGGAGCGCTTCAGCCATTGCTTCACGCGTTACGTGCAGCTGAGAGTGATCGGACGCGGC 1208
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1124 TAGGAGCGCTTCAGCCATTGCTTCACGCTTTACGAGCTGCTGAGAGTGATCGGACGCGGC 1183
Query 1209 ATGATTCGGCTCTCGCGCTTTACCATTTGACGTTGAATCAGACGAATCGATCAAAGCTCG 1268
|||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct 1184 ATGATTCGGCTCTCGCGCTTTACCATCTGTCGTTGAATCAGACGAATCGGTCGAAGCTCG 1243
Query 1269 TTAGGCTTGGAGCGGTACCAGCGCTTTTCTCGATGGTTAGGTCCGGTGAATCGGCGAGCA 1328
||||||||||||| || ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1244 TTAGGCTTGGAGCAGTTCCAGCGCTTTTCTCGATGGTTAGATCAGGTGAATCGGCGAGTA 1303
Query 1329 GGGCATTGTTGGTGATCTGTAATTTAGCGTGTTGTAGTGAAGGAAGATCGGCGATGCTTG 1388
| ||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||
Sbjct 1304 GAGCATTGTTGGTGATCTGTAATTTAGCGTGTTGTAGCGAAGGACGATCAGCAATGCTTG 1363
Query 1389 ATGCGAATGCGGTTGCGATTCTTGTAGGGAAGTTAAGGGAGGAGTGGACGGAGGAGCCGA 1448
|||| ||||||||||||||||| ||||||||| || | |||||| ||||||| ||||| |
Sbjct 1364 ATGCAAATGCGGTTGCGATTCTCGTAGGGAAGCTACGTGAGGAGAGGACGGATGAGCCAA 1423
Query 1449 CAGAGGCCCGGTCATCGTCATCGGCTCGTGAGAATTGCGTAGCGGCGTTGTTCGCATTGA 1508
||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 1424 CAGAGGCTCGGTCATCGTCTTCAGCTCGTGAGAATTGCGTGGCGGCGTTGTTCGCGTTGA 1483
Query 1509 GCCACGAGAGTCTTCGATTCAAAGGACTAGCGAAGGAGGCGAGAGCAGTGGAAGTGTTGA 1568
||||||||||||| |||||||| || ||||||| ||||| ||||||||||||||| |||
Sbjct 1484 GCCACGAGAGTCTCCGATTCAAGGGTTTAGCGAAAGAGGCAAGAGCAGTGGAAGTGCTGA 1543
Query 1569 AGGAAGTGgaagagagaggaacagagagagctagagagaaagcaaagaagattcttcagc 1628
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1544 AGGAAGTGGAAGAGAGAGGAACAGAGAGAGCGAGAGAGAAAGCGAAGAAGATTCTTCAGT 1603
Query 1629 tgatgagagaaagagTGCCGGAGGATGATGAAGAAGATGGCGAAGGATCAATTGATTGGG 1688
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1604 TGATGAGAGAAAGAGTGCCGGAGGATGATGAAGAAGACGGTGAAGGATCAATTGATTGGG 1663
Query 1689 ACCGAGTTATCGACTCCAACGGCTCAATTAGGTCTAGATTCCGAGTTGGTGGT---AGAA 1745
|||||||||||||||| |||||||| ||| | || |||||||||||||||||| ||||
Sbjct 1664 ACCGAGTTATCGACTCGAACGGCTCGATTCGATCCAGATTCCGAGTTGGTGGTGGTAGAA 1723
Query 1746 ACAGAGTGGTCACTCAAAACTCCTCTGGCTTCTAAAGTTCCATTCCATTTGTTGTTGTAT 1805
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1724 ACAGAATGGTCACTCAAAACTCCTCTGGCTTCTAA-GTCCCATTCCATTTGTTGTTGTAT 1782
Query 1806 AGTAGACATTCAAAATGTTTTGTGATTGAAATTTTTT-GTAAACTTGACTTGAAATATGT 1864
|| | |||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 1783 AG-A--CATTGAAAATGTTTTGTGATTGAAATTTTTTTGTAT-CTTGACTTGAAATATTT 1838
Query 1865 GAGaaaaaaa 1874
||||||||||
Sbjct 1839 GAGAAAAAAA 1848
Score = 241 bits (130), Expect = 2e-62
Identities = 155/166 (93%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 1 CAGAAAATCACGAAAGATGAATTCAAATCCC-TAATTCCTCTC--CATAAAACCCAAAAC 57
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1 CAGAAAATCACGAAAGATGAATTCAAA-CCCTTAATTCCTCTCAAAATAAAACCCAAAAC 59
Query 58 CCTTTTCAGAAATCAAACTCACCACCAATTC-CTGACCGTTGATTTGTCGCAGATGGGTA 116
|||||||||| ||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 60 CCTTTTCAGATATCAAACTCACCACCAA-TCACCGACCGTTGATTTGTTGCAGATGGGTA 118
Query 117 AAAACGGACGGCTCAGATGGAATCCTTTCAGCCACAGATCGTCTTC 162
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 119 AAAACGGACGGCTCAGATGGAATCCTTTCAACCACAGATCGTCTTC 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5