BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65205.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951363 jgi|Araly1|951363|scaffold_803250.1 1415 0.0
Ahg487830 jgi|Araly1|487830|fgenesh2_kg.6__964__AT5G10050.1 538 3e-152
> Ahg951363 jgi|Araly1|951363|scaffold_803250.1
Length=901
Score = 1415 bits (766), Expect = 0.0
Identities = 843/880 (96%), Gaps = 5/880 (1%)
Strand=Plus/Plus
Query 17 AATGGGAAGCAGCAGCGACGAGACGCCAGTGGTTCTCATCACAGGATGTTCTCAGGGAGG 76
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 22 AATGGGAAGCAGCAGCGACGAGACGCCAGTTGTTCTCATCACAGGATGTTCTCAGGGAGG 81
Query 77 AATCGGTCACGCGTTGGCGCGTGAGTTCTCGGCTAATGGTTGTCGTGTGGTGGCGACGAG 136
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 82 AATCGGCCACGCGTTGGCGCGTGAGTTCTCGGCGAATGGTTGTCGAGTGGTGGCTACGAG 141
Query 137 TCGATCGCAGAAG-ACGATGACTGAATTGGAGAAAGATTCCAAGTTCTTTGTGCAAGAGC 195
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 142 TCGATCGCAG-AGCACGATGACTGAATTGGAGAAAGATCCCAAGTTCTTTGTGCAAGAGC 200
Query 196 TCGATGTTCAGTCTGAGCAGAGCGTGAGTAAAGTTGTGTCGAAAGTTATCGACAAATTTG 255
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 201 TCGATGTTCAATCGGAGCAGAGCGTGAGTAAAATTGTGTCGAAAGTTATCGACAAATTTG 260
Query 256 GTCAGATTGATGTTTTGGTTAATAACGCCGGAGTTCAGTGTATCGGACCTTTGGCGGAGA 315
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 261 GTCAGATCGATGTTTTGGTTAATAATGCCGGAGTTCAGTGTATCGGACCTTTGGCCGAGA 320
Query 316 TTCCAATTTCAGCCATGGATTACACCTTCAACACCAATGTGCTCGGTTCCATGAGGATGA 375
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCCAATTTCAGCCATGGAAAACACCTTCAACACCAATGTGCTCGGTTCCATGAGGATGA 380
Query 376 CTCAAGCTGTTGTACCTCACATGGCGTCTAAGAAAAAGGGAAAGATTGTGAACATAGGAA 435
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 381 CTCAAGCTGTTGTACCACACATGGCGTCTAAGAAAAAGGGAAAGATTGTCAACATAGGAA 440
Query 436 GTATTAGCATAATGGCACCAGGACCATGGGCTGGGGTTTATACTGCATCAAAAGCTGCTC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTATTAGCATAATGGCACCAGGACCATGGGCTGGGGTTTATACTGCATCAAAAGCTGCTC 500
Query 496 TTCATGCTCTTACCGACACTTTAAGGTTGGAGCTTAAGCCATTTGGGATTGATGTAATCA 555
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 501 TTCATGCTCTTACCGACACTTTAAGGTTGGAGCTTAAGCCATTCGGAATTGATGTAATCA 560
Query 556 ACATTGTACCAGGAGGTATTCAATCAAACATAGCTAACTCAGGGATATCGAGTTTCAACA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACATTGTACCAGGAGGTATTCAATCAAACATAGCTAACTCAGGGATATCGAGTTTCAACA 620
Query 616 ATTTACCTGAATTGAAACTATACAAACCGTTCGAGGACGCTATCCGTGAGAGAGCGTTTC 675
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 621 ATTTACCTGAATTGAAAGTATACAAACCATTCGAGGACGCTATCCGTGAGAGAGCGTTTC 680
Query 676 TGTCGCAAAACATAAAGCCGATACCCACAGAGACTTTTGCGAAAGAGACTGTTTCCGTGG 735
|||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 681 TGTCACAAAACATAAAGCCAATACCCACAGAGACATTTGCCAAAGAGACTGTTTCCGTGG 740
Query 736 TGCTGAAGAAAAACCCACCGGCTTGGTACTCTACAGGTAGGTTATCTACAGTCATGGCGA 795
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 741 TGCTGAAGAAAAACCCACCGGCTTGGTACTCTACAGGAAGGTTATCGACCGTCATGGCGA 800
Query 796 TCATGCACCATATACCGATTTTCATGAAAGATTTTCTG-TTGACTAAGAGTTTTATGAAA 854
||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||
Sbjct 801 TCATGCACCATATGCCGATTTTCATGAAAGATTTTCTGCTT-ACCAAGAGTTTTATGAAA 859
Query 855 AAGGGAGTAAAACCTGAATAGTTGTGTTCTTGGTTAGAAA 894
||||||| ||||||||| |||| ||||||||||||| |||
Sbjct 860 AAGGGAGCAAAACCTGAGTAGTAGTGTTCTTGGTTA-AAA 898
> Ahg487830 jgi|Araly1|487830|fgenesh2_kg.6__964__AT5G10050.1
Length=920
Score = 538 bits (291), Expect = 3e-152
Identities = 643/810 (79%), Gaps = 35/810 (4%)
Strand=Plus/Plus
Query 15 AAAATGGGAAGCAGCAG-CGACGAGACG-CCAGTGGTTCTCATCACAGGATGTTCTCAGG 72
||||| || || ||| | |||||||| | || |||||||| || || || ||||||||||
Sbjct 1 AAAAT-GG-AG-AGC-GACGACGAGA-GTCCGGTGGTTCTAATTACGGGGTGTTCTCAGG 55
Query 73 GAGGAATCGGTCACGCGTTGGCGCGTGAGTTCTCGGCTAATGGTTGTCGTGTGGTGGCGA 132
|||| || ||||||||| |||| ||||||||| | | || || || || ||||||||||
Sbjct 56 GAGGGATTGGTCACGCGCTGGCACGTGAGTTCACTGAGAAGGGATGCCGAGTGGTGGCGA 115
Query 133 CGAGTCGATCGCAGAAG-ACGATGACTGAAT-TGGAGAAAGATTCCAAGTTCTTTGTGCA 190
|||||||||| | | || || ||||| | || ||||| ||||||| | ||| || ||| |
Sbjct 116 CGAGTCGATCAC-GGAGCACCATGAC-GGATCTGGAGCAAGATTCGAGGTTATTCGTG-A 172
Query 191 A-GAGCTCGATGTTCAGTCTGAGCAGAGCGTGAGTAAAGTTGTGTCGAAAGTTATCGACA 249
| ||||| ||||| || || || |||| |||||||| ||| ||||| | ||||| || |
Sbjct 173 AGGAGCTTGATGTGCAATCGGACCAGAATGTGAGTAAGGTTTTGTCGGAGGTTATTGATA 232
Query 250 AATTTGGTCA-GATTGATGTT-TTGGTTAATAACGCCGGAGTTCAGTGTATCGGACCTTT 307
| || ||| | ||| || ||| || || || |||||||||||||||||| ||||||| |
Sbjct 233 AGTTCGGT-AGGATCGACGTTCTT-GTCAACAACGCCGGAGTTCAGTGTGTCGGACCACT 290
Query 308 GGCGGAGATTCCAATTTCAGCCATGGATTACACCTTCAACACCAATGTGCTCGGTTCCAT 367
|||||||| ||||||||| |||||||| |||| |||||||||||||| | ||||||||
Sbjct 291 GGCGGAGACTCCAATTTCCGCCATGGAAAACACATTCAACACCAATGTTTTTGGTTCCAT 350
Query 368 GAGGATGACTCAAGCTGTTGTACCTCACATGGCGTCTAAGAAAAAGGGAAAGATTGTGAA 427
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 351 GAGGATGACTCAAGCTGTTGTACCTCACATGGTGTCTAAAAAAAAGGGAAAGATTGTCAA 410
Query 428 CATAGGAAGTATTAGCA-TAATGGCACCAGGACCATGGGCTGGGGTTTATACTGC-ATCA 485
| | |||||||| | | | |||||||| || |||||||||||||| ||||| || | ||
Sbjct 411 CGTTGGAAGTATCA-CTGTTATGGCACCTGGTCCATGGGCTGGGGTCTATACAGCTACCA 469
Query 486 AAAGCTGCTCTTCATGCTCTTACCGACACTTTAAGGTTGGAGCTTAAGCCATTTGGGATT 545
|| |||||| |||||||||||||||| || | |||||||||||| ||| |||||||||
Sbjct 470 AA-GCTGCTATTCATGCTCTTACCGATACCCTGAGGTTGGAGCTTCTGCCCTTTGGGATT 528
Query 546 GATGTAATCAACATTGTACCAGGAGGTATTC-AATCAAACATAGCTAACTCAGG-GATAT 603
||||| |||||| |||| || ||||| || || |||||||||| ||||||| | |
Sbjct 529 GATGTCATCAACGTTGTCCCGGGAGGAATAAGAA-CAAACATAGCGAACTCAGCTG-TGG 586
Query 604 CGAGTTTCAACAATTTACCTGAATTGAAACTATACAAACCGT-TCGAGGACGCTATCCGT 662
| | |||||||| | ||||| ||||||||||||| || | | || || |||||| |
Sbjct 587 CAACCTTCAACAAAATGCCTGAGCTGAAACTATACAAGCCTTAT-GAAGAAGCTATCAGA 645
Query 663 GAGAGAGCGTTTCTGTCGCAAAACATAAAGCCGATAC-CCA-CAGAGACTTTTGCGAAAG 720
|| || |||||| | || || | || ||||| | || || |||| || || || ||||
Sbjct 646 GAAAGGGCGTTTATATCACAGAGGATGAAGCC-A-ACTCCTGCAGAAACATTCGCCAAAG 703
Query 721 AGACTGTTTCCGTGGTGCTGAAGAAAAACCCACCGGCTTGGTACTCTACAGGTAGGTTAT 780
| || || | | ||||||||||| |||||||| ||||||| |||| |||| |||| ||
Sbjct 704 ACACCGTAGCTGCAGTGCTGAAGAAGAACCCACCCGCTTGGTTCTCTTCAGGCAGGT-AT 762
Query 781 -CTACAGTCATGGC-GATCATGCACCATAT 808
| || ||||||| | ||||| |||||||
Sbjct 763 TCAACCCTCATGGCAG-TCATGTACCATAT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5