BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65207.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496747 jgi|Araly1|496747|fgenesh2_kg.8__2563__AT5G65207.1 398 2e-110
> Ahg496747 jgi|Araly1|496747|fgenesh2_kg.8__2563__AT5G65207.1
Length=301
Score = 398 bits (215), Expect = 2e-110
Identities = 283/313 (90%), Gaps = 16/313 (5%)
Strand=Plus/Plus
Query 4 ATAGAACCAAAGATAACCGAACATCAGAGGTAGATAAACCGGAGATAACCGATTAAATGG 63
||||||||| |||||||||||| | | | | |||| | || | |||||||| |||||
Sbjct 2 ATAGAACCAGAGATAACCGAAC-T-A-AAG-AGAT--A---GATA-AACCGATTCAATGG 51
Query 64 CGGACATAGCGATTTTGGTGGCGGAGGAGTACGAGAGGAGGATGAAGCATACGACGGTGG 123
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 52 CGGACATAGCGATTTTGGTGGCGGAGGAGTACGAGAGGAGGATGAAGCAT-C--CGGCGG 108
Query 124 GTTCGAGATCATCGCCGGTGGAATTTGATTGGTGGAAGATAATTCCGGCGAAGATGACTA 183
||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 109 GTTCGAGATCAGCGCCGGCGGAATTTGATTGGAGGAAGATTATTCCGGCGAAGATGACTG 168
Query 184 TAGCTTTTGACAAGATGAAGATTGAGAGTTTGAAGAAGAATTTTGAAGCTAAATCTGAGT 243
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 169 TTGCTTTTGACAAGATGAAGATTGAGAGTTTGAAGAAGAATCTTGAAGCTAAATCTCAGT 228
Query 244 TTGCTTTAGCCATCTCTCATGGCTTCTTCTCTGCTTGATTCCATTTTGTT---CATAGCT 300
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 229 TTGCTTTGGCCATCTCTCATGGCTTCTTCTCTGCTTGATTCCATTTTGTTGTTCATAGCT 288
Query 301 AATTTCGTTTCTT 313
|||||||||||||
Sbjct 289 AATTTCGTTTCTT 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14346501464
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5