BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65210.2
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070 1829 0.0
> Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070
Length=1107
Score = 1829 bits (990), Expect = 0.0
Identities = 1068/1107 (96%), Gaps = 0/1107 (0%)
Strand=Plus/Plus
Query 487 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 60
Query 547 CATCAATTCGGTATGTGGGGGGAGAGTTTCAAAAGCAATATTAGCAATGGGACTATGAAC 606
||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||
Sbjct 61 CATCAATTCGGTATGTGGGGGGAAAGTTTCAAGAGCAATATTGGCAATGGGAATATGAAC 120
Query 607 ACACCAAACCACATAATAATACCGAATAATCAGAAACTAGACAACAACGTGTCAGAGGAT 666
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACACCAAACCACATTATTATACCGAATAATCAGAAACTAGACAACAACTTGTCAGAGGAT 180
Query 667 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTCGATCAAGAAGCTTCAACGTCTAGA 726
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 181 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTTGATCAAGAAGCCTCTACGTCTAGA 240
Query 727 CATCCCGATAAGATACAAAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 786
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATCCCGATAAGATACAGAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 300
Query 787 TTGCGCAAGAAGGCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTA 846
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 301 TTGCGCAAGAAGGCTTATGTTCAGCAGCTGGAAACAAGCCGGTTGAAGCTAATTCAATTA 360
Query 847 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTAGGAAACGGAATAGATACT 906
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 361 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTGGGGAATGGAATAGATACT 420
Query 907 AATTCTCTCGGTTTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 966
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATTCTCTCGGATTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 480
Query 967 GGACATTGGGTTGAAGAACAGAACAGACAGATATGTGAACTAAGAACAGTTTTACACGGA 1026
|||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 481 GGACATTGGGTTGAAGAACAGAACCGACAGATATGCGAACTGAGAACGGTTTTACACGGA 540
Query 1027 CACATTAACGATATCGAGCTTCGTTCGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 1086
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CACATTAACGATATTGAGCTTCGTTTGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 600
Query 1087 CTTTTCCGGATGAAATCGTCTGCTGCCAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 1146
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 CTTTTCCGGATGAAATCATCTGCTGCAAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 660
Query 1147 TGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTT 1206
||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||
Sbjct 661 TGGAGAACTTCAGCAGAGCGGTTTTTCTTGTGGATTGGCGGATTTCGACCCTCGGATCTT 720
Query 1207 CTCAAGGTTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGTATGC 1266
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 CTCAAGGTTCTTTTGCCACATTTTGATATCTTGACGGATCAACAACTTCTAGATGTATGC 780
Query 1267 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 840
Query 1327 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 900
Query 1387 CAGGTGAATTCTGCTATGGATAGATTAGAAGCTTTGGTCAGTTTCGTAAATCAGGCTGAT 1446
|||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 901 CAGGTGAATTCTGCAATGGAGAGATTAGAAGCTTTGGTCAGTTTTGTTAATCAGGCTGAT 960
Query 1447 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATATTGACAACGCGACAAGCGGCT 1506
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 961 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATCTTGACCACACGACAAGCGGCT 1020
Query 1507 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1080
Query 1567 GCAACTCGACATCGTGAACCAACGTAG 1593
|| ||||||||||||||||||||||||
Sbjct 1081 GCGACTCGACATCGTGAACCAACGTAG 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5