BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65210.2 Length=1896 Score E Sequences producing significant alignments: (Bits) Value Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070 1829 0.0 > Ahg918319 jgi|Araly1|918319|Al_scaffold_0008_3070 Length=1107 Score = 1829 bits (990), Expect = 0.0 Identities = 1068/1107 (96%), Gaps = 0/1107 (0%) Strand=Plus/Plus Query 487 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 60 Query 547 CATCAATTCGGTATGTGGGGGGAGAGTTTCAAAAGCAATATTAGCAATGGGACTATGAAC 606 ||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||| Sbjct 61 CATCAATTCGGTATGTGGGGGGAAAGTTTCAAGAGCAATATTGGCAATGGGAATATGAAC 120 Query 607 ACACCAAACCACATAATAATACCGAATAATCAGAAACTAGACAACAACGTGTCAGAGGAT 666 |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 ACACCAAACCACATTATTATACCGAATAATCAGAAACTAGACAACAACTTGTCAGAGGAT 180 Query 667 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTCGATCAAGAAGCTTCAACGTCTAGA 726 ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 181 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTTGATCAAGAAGCCTCTACGTCTAGA 240 Query 727 CATCCCGATAAGATACAAAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 786 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CATCCCGATAAGATACAGAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 300 Query 787 TTGCGCAAGAAGGCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTA 846 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 301 TTGCGCAAGAAGGCTTATGTTCAGCAGCTGGAAACAAGCCGGTTGAAGCTAATTCAATTA 360 Query 847 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTAGGAAACGGAATAGATACT 906 ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 361 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTGGGGAATGGAATAGATACT 420 Query 907 AATTCTCTCGGTTTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 966 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AATTCTCTCGGATTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 480 Query 967 GGACATTGGGTTGAAGAACAGAACAGACAGATATGTGAACTAAGAACAGTTTTACACGGA 1026 |||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||| Sbjct 481 GGACATTGGGTTGAAGAACAGAACCGACAGATATGCGAACTGAGAACGGTTTTACACGGA 540 Query 1027 CACATTAACGATATCGAGCTTCGTTCGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 1086 |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 541 CACATTAACGATATTGAGCTTCGTTTGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 600 Query 1087 CTTTTCCGGATGAAATCGTCTGCTGCCAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 1146 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 601 CTTTTCCGGATGAAATCATCTGCTGCAAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 660 Query 1147 TGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTT 1206 ||||||||||||||||| || || ||||| ||||||||||||||||||||||| |||||| Sbjct 661 TGGAGAACTTCAGCAGAGCGGTTTTTCTTGTGGATTGGCGGATTTCGACCCTCGGATCTT 720 Query 1207 CTCAAGGTTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGTATGC 1266 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 721 CTCAAGGTTCTTTTGCCACATTTTGATATCTTGACGGATCAACAACTTCTAGATGTATGC 780 Query 1267 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 840 Query 1327 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 1386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 900 Query 1387 CAGGTGAATTCTGCTATGGATAGATTAGAAGCTTTGGTCAGTTTCGTAAATCAGGCTGAT 1446 |||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 901 CAGGTGAATTCTGCAATGGAGAGATTAGAAGCTTTGGTCAGTTTTGTTAATCAGGCTGAT 960 Query 1447 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATATTGACAACGCGACAAGCGGCT 1506 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 961 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATCTTGACCACACGACAAGCGGCT 1020 Query 1507 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1080 Query 1567 GCAACTCGACATCGTGAACCAACGTAG 1593 || |||||||||||||||||||||||| Sbjct 1081 GCGACTCGACATCGTGAACCAACGTAG 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71228758150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5