BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65230.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496754 jgi|Araly1|496754|fgenesh2_kg.8__2570__AT5G65230.1 1705 0.0
Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1 534 4e-151
> Ahg496754 jgi|Araly1|496754|fgenesh2_kg.8__2570__AT5G65230.1
Length=1174
Score = 1705 bits (923), Expect = 0.0
Identities = 1099/1183 (93%), Gaps = 16/1183 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCCTAGCTCAGATGAAACTGGTCTGAAGAAAGGTCCATGGTTGCCTGAA 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCTCCTAGCTCAGACGAAACCGGTCTGAAGAAAGGTCCATGGTTGCCTGAA 60
Query 61 GAAGATGATAAACTGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCCCTT 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGATAAACTCATCAATTATATCCACAAACATGGCCATAGCAGCTGGAGTGCCCTT 120
Query 121 CCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTAT 180
Query 181 TTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTGAAC 240
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 181 TTGAGACCGGACATTAAGCGAGGAAAATTCTCAGCTGAAGAAGAAGAGACCATCCTGAAC 240
Query 241 CTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGGACGAACT 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CTTCATGCGGTTCTTGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGGAAGAACT 300
Query 301 GACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGATGGGT 360
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 301 GACAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAACTGATTCAGATGGGT 360
Query 361 TTTGACCCCATGACCCATCAGCCAAGAACCGATGATATCTTCTCAAGTTTATCTCAGCTC 420
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTTGACCCCATGACTCATCGGCCAAGAACCGATGATATCTTCTCAAGCTTATCTCAGCTC 420
Query 421 ATGTCTCTGTCTAACCTAAGAGGACTTGTTGATCTGCAGCAACAGTTTCCAATGGAAGAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 ATGTCTCTGTCTAACCTAAGAGGACTTGTTGATCTGCAGCAACAGTTTCCAATTGAAGAT 480
Query 481 CAAGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTTCCAATACCTTCTT 540
|| || | | | |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 481 CATGCTCGAATGAATCTCCAAACTGAGATGGCTAAGCTGCAGTTGTTCCATTACCTTCTT 540
Query 541 CAACCTTCTCCTGCTCCCATG-AGTATCAACAAC-ATTAACCCTAA-CATTCTCAATCTC 597
||| || ||||| |||| | | | ||| ||| | | | || ||| |||||||||||||
Sbjct 541 CAATCTCCTCCTCCTCCTA-GCAATATTAACC-CTAATGACT-TAAACATTCTCAATCTC 597
Query 598 CTCATCAAAGAAAACTCCGTTACCAGTAATATCGACCTCGGTTTCCTCTCCTCTCATCTT 657
|||||||||||||||||| ||||| || | ||||||||||||||||| | |||||||||
Sbjct 598 CTCATCAAAGAAAACTCCAATACCAATACTCTCGACCTCGGTTTCCTCACTTCTCATCTT 657
Query 658 CAAGACTTCAACAACAACAACCTCCCTTCCCTCAAAACCCTAGACGATAATCACTTCAGT 717
|||||||||||||||||| | |||||||||||||||||||||| || || |||||||||
Sbjct 658 CAAGACTTCAACAACAAC--C-TCCCTTCCCTCAAAACCCTAGAAGAAAACCACTTCAGT 714
Query 718 CAAAACACTTCTCCAATATGGCTCCATGAACCACCGAGCTTGAACCAAACTATGTTGCCT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CAAAACACTTCTCCAATATGGCTCCATGAACCACCGAGCTTGAACCAAACTATGTTGCCT 774
Query 778 ACGCATGATCCTTGTGCTCAGAGTGTAGATGGTTTCGGCAGCAACCAAGCCTCCTCAAGC 837
|| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 775 ACTCATGATCCTTGTGCTCAGAGTGTAGATGGTTTCAGCGGCAACCAGGCCTCCTCAAGC 834
Query 838 CATGATCAAGAAGTAGCAGTCACAGACTCTGTAGATTGGCCTGATCATCATCTATTTGAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CATGATCAAGAAGTAGCAGTCACAGACTCTGTAGATTGGCCTGATCATCATCTATTTGAT 894
Query 898 GATTCCATGTTTCCAGACATTTCTTATCAATCTTAAGGTATGTATGTATGTATATGTTTC 957
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 GGCTCCATGTTTCCAGACATTTCTTATCAATCTTAAGGTATGTACGTATGTATATGTTTC 954
Query 958 ACAAGAAGTTGACTGGATTTGTTTGGTGTCGCTCTGCATGTGGTTCTATAT----CTATA 1013
| ||||| ||||||| ||||||||| ||| ||| ||||||||||||||||| |||||
Sbjct 955 ATAAGAACTTGACTGAATTTGTTTGATGTTGCTGTGCATGTGGTTCTATATATATCTATA 1014
Query 1014 TACGATGATTCATGATGTGTGATAATGTCTTAGAATGTAGTACATGTGTTCTTATGTATT 1073
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1015 TACGTTGATTCATGATGTGTGATAATGTCTTAGAATGTA---CATGTGTTCCTATGTATA 1071
Query 1074 TCTCATACATGTTATTTGTGTTCTTATAGAACATTTTATATGTTTGAATGTATCTTCATT 1133
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1072 ACTCATACATGTTGTTTGTGTTGTTATAGAACATTCTATATGTTTGAATGTATCTTCATT 1131
Query 1134 ACCTTAGTATGTAGAGAGACCAATCAACGATTGTTCAGATAAT 1176
||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1132 ACCCTAGTATGTAGAGAGACCAACCAACGATTGTTCAGATAAT 1174
> Ahg487856 jgi|Araly1|487856|fgenesh2_kg.6__990__AT5G10280.1
Length=1412
Score = 534 bits (289), Expect = 4e-151
Identities = 475/562 (85%), Gaps = 23/562 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCCTAGCTC-AGATGAAACTGGTCTGAAGAAAGGTCCATGG-TTGCCTG 58
|||||||||||||||| | | ||||| ||||||| ||||||||||| ||| | ||||
Sbjct 194 ATGGGAAGATCTCCTATC-CGTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACT-CCTG 251
Query 59 AAGAAGATGATAAAC-TGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCC 117
| |||||||| |||| || |||| ||| | || |||||||| ||||| |||||||| |||
Sbjct 252 ATGAAGATGAGAAACTTG-TCAACTATGTCCAAAAACATGGTCATAGTAGCTGGAGAGCC 310
Query 118 CTTCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAAC 177
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 311 CTTCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAAT 370
Query 178 TATTTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTG 237
|| |||||||| ||||| |||||||| | ||||||| |||| || ||| |||| ||| ||
Sbjct 371 TACTTGAGACCCGACATCAAGCGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTG 430
Query 238 AACCTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGG-ACG 296
||||||||| | ||||| || ||||||||||||| |||||||| || ||||| || | |
Sbjct 431 AACCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCAAATCAGTTACCAGGGA-G 489
Query 297 AACTGACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGAT 356
||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 490 AACAGACAACGAGATCAAGAATTTCTGGAACACCCATTTGAAGAAAAAGCTGATTCAGAT 549
Query 357 GGGTTTTGACCCCATGACCCATCAG-CCAAGAACCGATGATATCTTCTCAAGTTTATCTC 415
|||||||||||| ||||| |||| | |||||||||||| || |||||| | |||||||
Sbjct 550 GGGTTTTGACCCAATGACTCATC-GTCCAAGAACCGAT-AT--CTTCTCTGGCTTATCTC 605
Query 416 AGCTCATGTCTCTGTCT---AACCTAAGAGGACTT-GTTGATCTGCAGCAACAGTTTCCA 471
||||||||||| ||||| ||||| ||||| ||| |||||||||||||||||||||||
Sbjct 606 AGCTCATGTCTTTGTCTTCTAACCTGAGAGG-CTTTGTTGATCTGCAGCAACAGTTTCCG 664
Query 472 ATGGA--A-GACCA-AGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTT 527
|| || | || || | | |||| || |||||||| |||||||| || || ||||||||
Sbjct 665 ATTGATCAAGAACACA-CTATACTCAAACTCCAAACCGAGATGGCCAAACTTCAATTGTT 723
Query 528 CCAATACCTTCTTCAACCTTCT 549
||||||||||||||||| |||
Sbjct 724 TCAATACCTTCTTCAACCATCT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5