BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65250.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496756 jgi|Araly1|496756|fgenesh2_kg.8__2572__AT5G65250.1 1550 0.0
> Ahg496756 jgi|Araly1|496756|fgenesh2_kg.8__2572__AT5G65250.1
Length=1166
Score = 1550 bits (839), Expect = 0.0
Identities = 1050/1146 (92%), Gaps = 37/1146 (3%)
Strand=Plus/Plus
Query 69 TGGACGTCAAGGTCGTAGCCATTTCTTGCAATGACCTGAGATTTAAC-CAGTCACTTGTC 127
||||||||||||||||||||||| |||||||||||||||| ||| | |||||||| |||
Sbjct 52 TGGACGTCAAGGTCGTAGCCATTACTTGCAATGACCTGAG-TTTTTCTCAGTCACTAGTC 110
Query 128 ACAGACCCGAAAAGACGATAATGTCCTTATCGCTTCCTTCTCGATACGCTCTCTTCTCCG 187
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 111 ACAGACCCGAAAAGACAATAATGTCCTTATCGCTTCCTTCTCGATACGCTCTCTTCTCTG 170
Query 188 GCTCGACTCCTGTTCGCATCAGCAGGAGGAGCAACCTCTGCTTCGCCGTCTCCGCCGCAC 247
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 171 GCTCGACTCCTGTTCGCATCAGC---AGGAGCAACCTCTGCTTCGCAGTCTCCGCCGTAC 227
Query 248 GAGCTTCTCGCCGGGATTCTATATCATTCCCCCAGCCTATCTTCCTCCGCCACGTCATCT 307
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 228 GAACTTCTCGCCGGGATTCTATATCATTCCCTCAGCCTATCCTCCTCCGCCACGTCATCT 287
Query 308 CTACCCAGTCGAATTTCGAGATCGATCGAAATTATAGAGCTCATGCGTCTTCTATCGGAT 367
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 288 CTACCCGGTCGAATTTCGAGATCGATCGAGACTATAGAGCTCATGCGTCTTCTATCGGAT 347
Query 368 CATTCGAGGATAGCTCTTCTTCTAACTTACTAGAAGACGCCAGTTCCGATGGTTTCGATT 427
||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 348 CATACGAGGATAGCTCTTCTTCTAACGAACTAGAAGACGCCAATTCCGATGGTTTCGATT 407
Query 428 TGGGCAGCTTTGTTTCTTTCGCGGAAGCGCTTTGTATTTTATCATCCGCCGTGATTTCAG 487
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 408 TGGGCAGCTTTGTTTCTTTCGCGGAAGCGCTTTGTATTTTATCTTCCGCCGTGATTTCGG 467
Query 488 TGGTTCTCGCGGTGAATTACGTGGTGGTTGGTGAAATTGGGAAAAAGGTTTTGTCTTTAG 547
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 468 TGGTTCTCGCGGTGAATTACGTGGTGGTAGGTGAAATTGGGAAAAAGGTCTTGTCTTTAG 527
Query 548 GTTTCGTTGGATTGGTTGGCTCAGTCGCCACTGGTTCTTGGCTTAGACGACGACAATGGA 607
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 528 GTTTCGTTGGATTGGTTGGTTCAGTCGCCACTGGTTCGTGGCTTAGACGACGGCAATGGA 587
Query 608 TGAGGATTTGCAAAGGCGCGAGAGAAAGTGAGGGGACTAATCTAATTCGAAGGTTGGAGA 667
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 588 TGAGGATTTGCAAAGGAACGAGAGAAAGTGAGGGAACTAATCTAATTCGAAGGTTGGAGA 647
Query 668 AACTTGAAAAGGATTTAAAAAGTTCGACTTCTATTGTTAGAGTTCTTTCTAGGCATCTGG 727
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 648 AACTTGAAAAGGATTTAAAAAGCTCTACTTCTATTGTTAGAGTTCTTTCTAGGCATCTCG 707
Query 728 AGAAGCTGGGAATTCGGTTTCGGGTCACACGAAAAGCTCTAAAGGAACCCATTTCTGAGA 787
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 708 AGAAGCTGGGAATTCGGTTTCGGGTCACCCGAAAATCTCTAAAGGAACCCATTTCTGAGA 767
Query 788 CTGCAGCTTTAGCTCAAAAGAATTCTGAGGCTACGAGGGTATTAGTTGCACAGCAAGAGA 847
|||||||||| ||||||||||| |||||||| || || || |||| |||||| |||||||
Sbjct 768 CTGCAGCTTTGGCTCAAAAGAACTCTGAGGCCACTAGAGTGTTAGCTGCACAACAAGAGA 827
Query 848 TTCTAGAGAAGGAGCTTGGCGAAATTCAAAAGGTGCTGCTTGC-TATGCAGGAACAACAG 906
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 828 TTCTAGAGAAGGAGCTTGGCGAAATTCAAAAGGTGCTGCTTGCCT-TGCAGGAACAACAG 886
Query 907 CGAAAGCAACTCGAGCTTATCCTTACAATCGCAAAGAGCAGCAAGCTGTTTGAGAGCAGT 966
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 887 CGAAAGCAACTTGAGCTAATCCTTACAATAGCAAAGAGCAGCAAGCTGTTTGAGAGCAGT 946
Query 967 ACTAGTA-GCAAGCAA-TCCCCTAGTGAACAACGGAAAAATAAAGCAGAGGAACCCTCAA 1024
| ||| | ||| |||| | || || |||||||||||| |||||||||||||||||||||
Sbjct 947 AGTAGCAAGCA-GCAAGTGCC-TAACGAACAACGGAAAGATAAAGCAGAGGAACCCTCAA 1004
Query 1025 CACCCAAACAGATACTCGTTCAATAAAC-AGACGTAATGACAATGTGTAAGTTTTGTATG 1083
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
Sbjct 1005 CACCCAAACAGATACTCGTTCAATAAACCAGACATAATGACAATGTGTAAGTTTTA-A-G 1062
Query 1084 GACAATACTCTTTGAAGTCAAGAGAGCGATAACACTGTATGGAGAAACTCACTGTGGTTA 1143
| | | ||| || | | | | | | | ||||||| ||||||||||||
Sbjct 1063 -AGAG--C-----GAA---AACA---C--TGA-A-T-T-TGGAGAAG-TCACTGTGGTTA 1101
Query 1144 CGTAGCTGTA-TTATCATCATTGTTTTGGGTTTTGTAATTTTCACTTGTTTCGAATTAAA 1202
|||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1102 CGTAGCTGTAATTGTCATCATTGTTTTGGGTTT-GTAATTTTCACTTGTATCGAATTAAA 1160
Query 1203 Gttttt 1208
||||||
Sbjct 1161 GTTTTT 1166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5