BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65260.1 Length=966 Score E Sequences producing significant alignments: (Bits) Value Ahg951370 jgi|Araly1|951370|scaffold_803257.1 1125 0.0 Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 475 2e-133 Ahg887613 jgi|Araly1|887613|Al_scaffold_0053_7 263 2e-69 Ahg887608 jgi|Araly1|887608|Al_scaffold_0053_2 263 2e-69 > Ahg951370 jgi|Araly1|951370|scaffold_803257.1 Length=704 Score = 1125 bits (609), Expect = 0.0 Identities = 671/701 (96%), Gaps = 3/701 (0%) Strand=Plus/Plus Query 19 agagcgagagagaCGATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGAC 78 |||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 7 AGAGAGAGAGCGACGATGGAGGAAGAGGAGCATGAGGTTTACGGTGGAGAAATTCCCGAC 66 Query 79 GTCGGAGAGATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCT 138 ||||| |||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 67 GTCGGCGAGATGGATGGAGATATGGAGGCTCTTAATCCCGATTTGGATATGGCTGCCGCC 126 Query 139 GATGATGATGCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGAC 198 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 127 GATGATGATGCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGAT 186 Query 199 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAGAT 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 187 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCCCAAGAT 246 Query 259 CCTGCTAGTATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 318 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 247 CCTGCTAGTATTGCAGCAAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 306 Query 319 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 366 Query 379 GGCACTGTCCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCA 438 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 367 GGCACTGTCCATCGGGTGACCATTCTAACAGACAAATTCGGGCAGCCAAAGGGATTTGCT 426 Query 439 TATGTAGAATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAG 498 ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 427 TATGTAGAATTTGTTGAAGTGGAAGCTGTACAAGAGGCTCTACAACTGAATGAATCAGAG 486 Query 499 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 546 Query 559 TTCCGTGGTAGACGATTCAATCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGTCT 618 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 547 TTTCGTGGTAGACGATTCAACCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGCCT 606 Query 619 CCTTATATGTATTCCCCATATGGATACGGAAAAGCTCCTAGGTTTAGAAGGCCTATGCGT 678 ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 607 CCTTACATGTATTCTCCATATGGATATGGAAAAGCTCCTAGGTTCAGAAGGCCTATGCGT 666 Query 679 TACATGCCGTACCAATAAAACCGTCATCATGGTTAAGCATA 719 ||||||||||||||||||||||||||| ||||||||||| Sbjct 667 TACATGCCGTACCAATAAAACCGTCAT---GGTTAAGCATA 704 > Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 Length=966 Score = 475 bits (257), Expect = 2e-133 Identities = 512/631 (81%), Gaps = 33/631 (5%) Strand=Plus/Plus Query 34 ATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGACGTCGGAGAGATGGAT 93 ||||||||||| ||||||||||||||||| || |||| ||| | | || || | || Sbjct 4 ATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAA-TCC---C-T--GA-AG-TCGA- 53 Query 94 GGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTG-CTGCTGATGATGATGCGGT 152 ||| | ||| | || | | || ||| | |||||| ||| | || |||||||| || || Sbjct 54 CGAG--ACGGATGTTCCCGATCCGGATATCGATATGTCTGCCGGC-GATGATGACGCCGT 110 Query 153 TAAGGAG-TTGGATGAAATGAAGAA-ACGATTGAAAGAGATGGAGGACGAAGCTGCTGCT 210 || |||| || | ||| |||||||| | ||||||| ||||||||||| ||||||||||| Sbjct 111 TACGGAGCTT-GCTGAGATGAAGAAGA-GATTGAAGGAGATGGAGGAAGAAGCTGCTGCG 168 Query 211 CTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAG---CTCAAGATCCTGCTAGT 267 || || |||||||| || || ||||| || |||||||||| ||||||||||||||||| Sbjct 169 CTACGCGAGATGCAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGT 228 Query 268 ATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTTGTTGGCAAT 327 || || || ||||||| ||| ||||||||||| |||||||||||||||| |||||||||| Sbjct 229 ATGGCTGCAAATCAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAAT 288 Query 328 GTTGATTACGCTTGCACACCTGAAGAAGTTCAGC-AGCATTTCCAAACATGCGGCACTGT 386 || ||||| || || |||||||||||||| || | | ||||||||||||||||| || || Sbjct 289 GTCGATTATGCCTGTACACCTGAAGAAGTGCAACTA-CATTTCCAAACATGCGGAACAGT 347 Query 387 CCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCATATGTAGA 446 | | || || |||||||| | ||||| || || ||||||||||||||||| ||||| || Sbjct 348 CAACCGTGTAACCATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGA 407 Query 447 ATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAGCTACATGG 506 || || ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 408 GTTTGTAGAAGTCGAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGG 467 Query 507 TCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAGT-TC--CG 563 ||||||| | ||||||| || ||| |||| || ||||||||| ||||||||| || | Sbjct 468 TCGTCAACTGAAGGTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCC 527 Query 564 TGGTAGACGATTCAATCCATACA-TGGGTTACCGGTTCCGCAGACC-TTTCATGTCTCCT 621 ||| | || ||||| || | || |||| ||||| || |||||||| ||| || ||||| Sbjct 528 TGG--G-CGTTTCAACCCTT-CAATGGGATACCGCTTTCGCAGACCCTTTG-TGCCTCCT 582 Query 622 TATATGTATTCCCCATATGGATACGGAAAAG 652 ||| | |||||||||||||||||||| |||| Sbjct 583 TATTTTTATTCCCCATATGGATACGGGAAAG 613 > Ahg887613 jgi|Araly1|887613|Al_scaffold_0053_7 Length=201 Score = 263 bits (142), Expect = 2e-69 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 88 ATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGAT 147 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 1 ATGGATGGAGATATGGAGGCTCTCAATCCCGATTTGGATATGGCTGCCGCCGATGATGAT 60 Query 148 GCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCT 207 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGACGAAGCTGCT 120 Query 208 GCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAG 256 ||||| ||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 121 GCTCTACGTGAGATGCAGGTTAAGGTCGAGAAGGAAATGGCAGCCCAAG 169 > Ahg887608 jgi|Araly1|887608|Al_scaffold_0053_2 Length=201 Score = 263 bits (142), Expect = 2e-69 Identities = 160/169 (95%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 88 ATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGAT 147 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 1 ATGGATGGAGATATGGAGGCTCTCAATCCCGATTTGGATATGGCTGCCGCCGATGATGAT 60 Query 148 GCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCT 207 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 61 GCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGACGAAGCTGCT 120 Query 208 GCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAG 256 ||||| ||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 121 GCTCTACGTGAGATGCAGGTTAAGGTCGAGAAGGAAATGGCAGCCCAAG 169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35873664897 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5