BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65260.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951370 jgi|Araly1|951370|scaffold_803257.1 1125 0.0
Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2 475 2e-133
Ahg887613 jgi|Araly1|887613|Al_scaffold_0053_7 263 2e-69
Ahg887608 jgi|Araly1|887608|Al_scaffold_0053_2 263 2e-69
> Ahg951370 jgi|Araly1|951370|scaffold_803257.1
Length=704
Score = 1125 bits (609), Expect = 0.0
Identities = 671/701 (96%), Gaps = 3/701 (0%)
Strand=Plus/Plus
Query 19 agagcgagagagaCGATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGAC 78
|||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 7 AGAGAGAGAGCGACGATGGAGGAAGAGGAGCATGAGGTTTACGGTGGAGAAATTCCCGAC 66
Query 79 GTCGGAGAGATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCT 138
||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 67 GTCGGCGAGATGGATGGAGATATGGAGGCTCTTAATCCCGATTTGGATATGGCTGCCGCC 126
Query 139 GATGATGATGCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGAC 198
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 127 GATGATGATGCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGAT 186
Query 199 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAGAT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 187 GAAGCTGCTGCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCCCAAGAT 246
Query 259 CCTGCTAGTATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 318
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CCTGCTAGTATTGCAGCAAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTT 306
Query 319 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTTGGCAATGTTGATTACGCTTGCACACCTGAAGAAGTTCAGCAGCATTTCCAAACATGC 366
Query 379 GGCACTGTCCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCA 438
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 367 GGCACTGTCCATCGGGTGACCATTCTAACAGACAAATTCGGGCAGCCAAAGGGATTTGCT 426
Query 439 TATGTAGAATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAG 498
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 427 TATGTAGAATTTGTTGAAGTGGAAGCTGTACAAGAGGCTCTACAACTGAATGAATCAGAG 486
Query 499 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTACATGGTCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAG 546
Query 559 TTCCGTGGTAGACGATTCAATCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGTCT 618
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 547 TTTCGTGGTAGACGATTCAACCCATACATGGGTTACCGGTTCCGCAGACCTTTCATGCCT 606
Query 619 CCTTATATGTATTCCCCATATGGATACGGAAAAGCTCCTAGGTTTAGAAGGCCTATGCGT 678
||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 607 CCTTACATGTATTCTCCATATGGATATGGAAAAGCTCCTAGGTTCAGAAGGCCTATGCGT 666
Query 679 TACATGCCGTACCAATAAAACCGTCATCATGGTTAAGCATA 719
||||||||||||||||||||||||||| |||||||||||
Sbjct 667 TACATGCCGTACCAATAAAACCGTCAT---GGTTAAGCATA 704
> Ahg487865 jgi|Araly1|487865|fgenesh2_kg.6__999__AT5G10350.2
Length=966
Score = 475 bits (257), Expect = 2e-133
Identities = 512/631 (81%), Gaps = 33/631 (5%)
Strand=Plus/Plus
Query 34 ATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGACGTCGGAGAGATGGAT 93
||||||||||| ||||||||||||||||| || |||| ||| | | || || | ||
Sbjct 4 ATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAA-TCC---C-T--GA-AG-TCGA- 53
Query 94 GGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTG-CTGCTGATGATGATGCGGT 152
||| | ||| | || | | || ||| | |||||| ||| | || |||||||| || ||
Sbjct 54 CGAG--ACGGATGTTCCCGATCCGGATATCGATATGTCTGCCGGC-GATGATGACGCCGT 110
Query 153 TAAGGAG-TTGGATGAAATGAAGAA-ACGATTGAAAGAGATGGAGGACGAAGCTGCTGCT 210
|| |||| || | ||| |||||||| | ||||||| ||||||||||| |||||||||||
Sbjct 111 TACGGAGCTT-GCTGAGATGAAGAAGA-GATTGAAGGAGATGGAGGAAGAAGCTGCTGCG 168
Query 211 CTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAG---CTCAAGATCCTGCTAGT 267
|| || |||||||| || || ||||| || |||||||||| |||||||||||||||||
Sbjct 169 CTACGCGAGATGCAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGT 228
Query 268 ATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTTGTTGGCAAT 327
|| || || ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 229 ATGGCTGCAAATCAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAAT 288
Query 328 GTTGATTACGCTTGCACACCTGAAGAAGTTCAGC-AGCATTTCCAAACATGCGGCACTGT 386
|| ||||| || || |||||||||||||| || | | ||||||||||||||||| || ||
Sbjct 289 GTCGATTATGCCTGTACACCTGAAGAAGTGCAACTA-CATTTCCAAACATGCGGAACAGT 347
Query 387 CCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCATATGTAGA 446
| | || || |||||||| | ||||| || || ||||||||||||||||| ||||| ||
Sbjct 348 CAACCGTGTAACCATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGA 407
Query 447 ATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAGCTACATGG 506
|| || ||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 408 GTTTGTAGAAGTCGAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGG 467
Query 507 TCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAGT-TC--CG 563
||||||| | ||||||| || ||| |||| || ||||||||| ||||||||| || |
Sbjct 468 TCGTCAACTGAAGGTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCC 527
Query 564 TGGTAGACGATTCAATCCATACA-TGGGTTACCGGTTCCGCAGACC-TTTCATGTCTCCT 621
||| | || ||||| || | || |||| ||||| || |||||||| ||| || |||||
Sbjct 528 TGG--G-CGTTTCAACCCTT-CAATGGGATACCGCTTTCGCAGACCCTTTG-TGCCTCCT 582
Query 622 TATATGTATTCCCCATATGGATACGGAAAAG 652
||| | |||||||||||||||||||| ||||
Sbjct 583 TATTTTTATTCCCCATATGGATACGGGAAAG 613
> Ahg887613 jgi|Araly1|887613|Al_scaffold_0053_7
Length=201
Score = 263 bits (142), Expect = 2e-69
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 88 ATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGAT 147
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1 ATGGATGGAGATATGGAGGCTCTCAATCCCGATTTGGATATGGCTGCCGCCGATGATGAT 60
Query 148 GCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCT 207
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGACGAAGCTGCT 120
Query 208 GCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAG 256
||||| ||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 121 GCTCTACGTGAGATGCAGGTTAAGGTCGAGAAGGAAATGGCAGCCCAAG 169
> Ahg887608 jgi|Araly1|887608|Al_scaffold_0053_2
Length=201
Score = 263 bits (142), Expect = 2e-69
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 88 ATGGATGGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTGCTGCTGATGATGAT 147
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 1 ATGGATGGAGATATGGAGGCTCTCAATCCCGATTTGGATATGGCTGCCGCCGATGATGAT 60
Query 148 GCGGTTAAGGAGTTGGATGAAATGAAGAAACGATTGAAAGAGATGGAGGACGAAGCTGCT 207
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCGGTTAAGGAGTTGGATGAGATGAAGAAACGATTGAAGGAGATGGAGGACGAAGCTGCT 120
Query 208 GCTCTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAGCTCAAG 256
||||| ||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 121 GCTCTACGTGAGATGCAGGTTAAGGTCGAGAAGGAAATGGCAGCCCAAG 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5