BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65270.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951371 jgi|Araly1|951371|scaffold_803258.1 1192 0.0
Ahg325580 jgi|Araly1|325580|fgenesh1_pm.C_scaffold_6000800 610 6e-174
> Ahg951371 jgi|Araly1|951371|scaffold_803258.1
Length=722
Score = 1192 bits (645), Expect = 0.0
Identities = 696/721 (97%), Gaps = 1/721 (0%)
Strand=Plus/Plus
Query 89 GAGAGAGAGACGTTGAAGAAGATGACTAGTGGAGGAGGATACGGAGATCCGTCGCAGAAG 148
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGAGAGAGAGGTTGAAGAAGATGACTAGTGGAGGAGGATACGGAGATCCGTCGCAGAAG 60
Query 149 ATTGATTATGTGTTCAAAGTGGTGTTGATCGGCGATTCCGCGGTTGGGAAATCACAGATA 208
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 ATTGATTATGTGTTCAAAGTGGTGTTGATCGGCGATTCAGCGGTTGGGAAATCGCAGATA 120
Query 209 CTGGCTCGTTATGCTAGAGACGAATTCAGTTTGGATTCTAAGGCCACCATCGGCGTTGAG 268
|| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 CTAGCTCGTTATGCGAGAGACGAGTTTAGTTTGGATTCTAAGGCCACCATCGGCGTTGAG 180
Query 269 TTTCAGACTCGGACGCTTGTTATCGATCACAAGAGTGTTAAGGCTCAGATCTGGGATACC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCAGACTCGGACGCTTGTTATCGATCACAAGAGTGTTAAGGCTCAGATCTGGGATACC 240
Query 329 GCCGGCCAAGAACGATACAGAGCAGTAACAAGTGCATATTACCGAGGAGCGGTTGGGGCG 388
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCCGGCCAAGAACGATACAGAGCTGTAACGAGTGCATATTACCGAGGAGCGGTTGGGGCG 300
Query 389 ATGTTGGTGTATGACATAACCAGACGCCAAACCTTTGACCATATCCCAAGATGGTTAGAA 448
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 301 ATGTTGGTGTATGACATAACCAGACGCCAAACCTTTGACCATATACCAAGATGGCTAGAA 360
Query 449 GAACTACGTGCTCATGCAGATAAGAACATTGTGATAATCCTTATTGGGAACAAGTCAGAT 508
||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GAATTGCGTGCTCATGCAGACAAGAACATTGTGATCATCCTTATTGGGAACAAGTCAGAT 420
Query 509 CTTGTGGATCAACGAGCTATACCGACAGAAGATGCGAAAGAATTTGCGGAGAAAGAAGGT 568
|||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||
Sbjct 421 CTTGTGGATCAACGAGCTATACCGACTGAAGATGCTAGAGAGTTTGCGGAGAAAGAAGGT 480
Query 569 TTGTTCTTCTTGGAGACATCTGCATTTAACGCAACCAATGTTGAGAGCGCTTTCTCCACG 628
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 TTATTCTTCTTGGAGACATCTGCATTTAACGCAACTAATGTTGAGAGCGCTTTCTCCACG 540
Query 629 GTTTTGACTGAGATCTTCAACATTGTGAACAAGAAAAGTCTGGCTGCGAGTGAAGATCAA 688
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 541 GTTTTGACTGAGATCTTCAACATTGTGAACAAGAAAAGTCTTGCCGCGAGTGAAGATCAA 600
Query 689 GAGAATGGTAATCCCGGGTCGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGT 748
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGAACGGTAATCCCGGGTCGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGT 660
Query 749 CAAGTGATACCAAACAAGAGTAACATGTGTTGTAACTCTTAGATAAACCAATTCAATTCT 808
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 CAAGTGATACCAAACAAGAGTAACATGTGTTGTAACTCTTAGATAA-CCAATTCAATTCT 719
Query 809 T 809
|
Sbjct 720 T 720
> Ahg325580 jgi|Araly1|325580|fgenesh1_pm.C_scaffold_6000800
Length=681
Score = 610 bits (330), Expect = 6e-174
Identities = 570/685 (83%), Gaps = 20/685 (3%)
Strand=Plus/Plus
Query 116 AGTGGAGGAGGATACGGAGATCCGTCGCAGAAGATTGATTATGTGTTCAAAG-TGGTGTT 174
|||||||||||||||||||| ||||||||||||||||| || || ||| ||| |||||||
Sbjct 7 AGTGGAGGAGGATACGGAGACCCGTCGCAGAAGATTGACTACGTCTTC-AAGCTGGTGTT 65
Query 175 GATCGGCGATTCCGCG-GTTGGGAAATCACAGATACTGGCTCGTTATGCTAGAGACGAAT 233
|||||| || || | | ||||| ||||| ||||||||| |||| || || ||| |||| |
Sbjct 66 GATCGGAGACTCTG-GTGTTGGCAAATCGCAGATACTGTCTCGGTACGCGAGAAACGAGT 124
Query 234 TCAGTTTGGATTCTAAGGCCACCATCGGCGTTGAGTTTCAGACTCGGACGCTTGTTATCG 293
|||| || ||||| || || ||||||||||| || ||||| ||||| || ||||||||||
Sbjct 125 TCAGCTTAGATTCCAAAGCTACCATCGGCGTCGAATTTCAAACTCGAACACTTGTTATCG 184
Query 294 ATCACAAGAGTGTTAAGGCTCAGATCTGGGATACCGCCGGCCAAGAACGATACAGAGCAG 353
| || |||||||| || |||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 185 ACCATAAGAGTGTCAAAGCTCAGATCTGGGACACCGCCGGCCAAGAACGGTATAGAGCGG 244
Query 354 TAACAAGTGCATATTACCGAGGAGCGGTTGGGGCGATGTTGGTGTATGACATAACCAGAC 413
| || ||||| |||||| |||||||||||||||||||| |||| || ||| | || ||||
Sbjct 245 TGACGAGTGCGTATTACAGAGGAGCGGTTGGGGCGATGCTGGTTTACGACGTGACTAGAC 304
Query 414 GCCAAACCTTTGACCATATCCCAAGATGG-TTAGAAGAACTACGTGCTCATGCAGATAAG 472
| ||||| ||||| ||||||||| | ||| || |||||| | || | | ||||| |||
Sbjct 305 GTCAAACATTTGATCATATCCCACGGTGGCTT-GAAGAATTGCGAAATAACGCAGACAAG 363
Query 473 AACATTGTGATAATCCTTATTGGGAACAAGTCAGATCTTGTGGATCAACGAGCTATACCG 532
||||||||||| || || ||||||| ||||| ||||||| ||||||||||| ||| ||
Sbjct 364 AACATTGTGATTATACTCGTTGGGAATAAGTCTGATCTTGAAGATCAACGAGCGATATCG 423
Query 533 ACAGAAGATGCGAAAGAATTTGCGGAGAAAGAAGGT-TTGTTCTTCTTGGAGACATCTGC 591
| |||||||| || ||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 424 ATGGAAGATGCTAAGGAATTCGCGGAGAAAGAAGGTCTT-TTCTTCTTGGAGACATCAGC 482
Query 592 AT-TTAACGCAACCAATGTTGAGAGCGCTTTCTCCACGGTTTTGACTGAGATCTTCAACA 650
| | |||||| ||| || ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 483 -TCTAAACGCAGTCAACGTGGAGAGTGCTTTCTCCACTGTTTTGACTGAGATTTTCAACT 541
Query 651 TTGTGAACAAGAAAAGTCTGGCTGC-GAGTGAA-GATCAAGAG-AATGGTAATCCCGGGT 707
|||| |||||||||||||| | ||| | ||||| || ||| | |||||| |||| | |
Sbjct 542 TTGTCAACAAGAAAAGTCTTGTTGCTG-GTGAAGGA-GAAG-GTAATGGTGATCCTGCAT 598
Query 708 CGCTTGCTGGTAAGAAGATTGATATTGTTCCAGGTCCTGGTCAAGTGATACCAAAC-AAG 766
||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| | |||
Sbjct 599 CGCTTGCTGGTAAGAAGATTGATATTGCTCCAGGTCCTGGTCAGGTGATTCCAA-CGAAG 657
Query 767 AGTAACAT-GTGTTGTAACTCTTAG 790
| || || |||||||||| |||||
Sbjct 658 AATAG-ATTGTGTTGTAACACTTAG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5