BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65274.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1 580 2e-165
Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1 479 7e-135
> Ahg496759 jgi|Araly1|496759|fgenesh2_kg.8__2575__AT5G65274.1
Length=405
Score = 580 bits (314), Expect = 2e-165
Identities = 369/395 (93%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTGCAGCAGCATTTGTTGAAGCTGATAATGCAGAGGAAATAATGGCAAGGATC 60
|||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGCTGGTGCAGCAGCACTTGTTGAAGCTGATAATGCAAATGAAATAATGGCAAGGATC 60
Query 61 GAAACCAAATCGCAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAACCAAATCGCAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTG 120
Query 121 AAAACGGCTCTTGATGGTTCGCCACCTAA-AACTC-TCGACGAACGTTGCAAGTCAGCTA 178
||||| ||||||||||||||||| | | |||| | || |||||||||||||| ||||
Sbjct 121 AAAACAGCTCTTGATGGTTCGCCTT-TGACAACTTAT-GATGAACGTTGCAAGTCGGCTA 178
Query 179 ATTGGATAGTTGTGCACAGAGCTATCATGGCGATAAAGGATATCGAAGGAATGTTAAATT 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 179 ATTGGATAGTTGTGCACAGAGCTATCATGGCGATAAAGGATATCGACGGAATGCTAAATT 238
Query 239 CTCTTACTGCCGAGTATTACGACATTCTCATGAAGTACTTGTACAGAGGTCTTTCGACTG 298
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTCTTGCTGCCGAGTATTACGACATTCTCATGAAGTACTTGTATAGAGGTCTTTCGACTG 298
Query 299 GTGA-CGAACCCACATGCGAACAGTGTTTGATGATTCACGAGAAACTAACAGAGAGAGCT 357
| || |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 299 G-GAACGAACCCACATGCGAACAATGTTTGATAATTCACGAGAAACTAATAGAGAGAGCT 357
Query 358 GGTCTCGGTTGCATTCTCCGTTGTCTGAGTGATAC 392
||||||||||||||||| |||||||| ||||||||
Sbjct 358 GGTCTCGGTTGCATTCTGCGTTGTCTTAGTGATAC 392
> Ahg490565 jgi|Araly1|490565|fgenesh2_kg.6__3699__AT4G01710.1
Length=499
Score = 479 bits (259), Expect = 7e-135
Identities = 352/397 (89%), Gaps = 6/397 (2%)
Strand=Plus/Plus
Query 13 GCAGCATTTGTTGAAGCTGATAATGCAGAGGAAATAATGGCAAGGATCGAAACCAAATCG 72
|||| ||| ||||| |||||||||||||| | |||||| || ||||||||||||||||||
Sbjct 7 GCAGAATTCGTTGAGGCTGATAATGCAGAAGCAATAATCGCGAGGATCGAAACCAAATCG 66
Query 73 CAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTT-AAAACGGCTCT 131
| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 67 CGGAAGATTGAAAGCTTACTCAAACAGTACAAACATGTCGAAGCT-TTGAAAACGGCTCT 125
Query 132 TGATGGTTCGCCACCTAAAACTCTCGACGAACGTTGCAAGTCAGCTAATTGGATAGTTGT 191
||| |||||||| || ||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 126 TGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGT 185
Query 192 GCACAGAGCTATCATGGCGATAAAGGATATCGAAGGAATGTTAAATTCTCTT-ACTGCCG 250
|||||||||||| ||||| ||||||||||| || |||||| | ||| ||||| | |||||
Sbjct 186 GCACAGAGCTATAATGGCCATAAAGGATATTGACGGAATGCTCAATGCTCTTGA-TGCCG 244
Query 251 AGTATTACGACATTCTCATGAAGTACTTGTACAGAGGTCTTTCGACTGGTGAC-GAACCC 309
| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||| || |||
Sbjct 245 AATATTACGACATTCTCATGAAGTACTTGTACAGAGGCCTTTCTACTGGCGACCGA-CCC 303
Query 310 ACATGCGAACAGTGTTTGATGATTCACGAGAAACTAACAGAGAGAGCTGGTCTCGGTTGC 369
|| ||||| ||||| |||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 304 ACCTGCGATCAGTGCTTGAAGATTCATGAGAAACTCACAGAGAGAGCTGGTCTCGGTTGC 363
Query 370 ATTCTCCGTTGTCTGAGTGATACTACCAATACCGTTT 406
|||||||| ||||| | |||||| | || |||||||
Sbjct 364 ATTCTCCGCTGTCTTACTGATACCATAAACACCGTTT 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14651746176
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5