BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65280.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358729 jgi|Araly1|358729|fgenesh1_pg.C_scaffold_8002516 1980 0.0
> Ahg358729 jgi|Araly1|358729|fgenesh1_pg.C_scaffold_8002516
Length=1305
Score = 1980 bits (1072), Expect = 0.0
Identities = 1228/1305 (94%), Gaps = 3/1305 (0%)
Strand=Plus/Plus
Query 85 ATGTCGTCGTCGG-TG-GATTTC-GTGACGGAACAGGGGAGATGCGGCGACGATGGTAAC 141
||||||||||||| | || || ||| | || ||| ||| | || || |||||||| ||
Sbjct 1 ATGTCGTCGTCGGCGGTGAAGTCTGTGGCTGAGCAGCGGATACGCAGCAACGATGGTGAC 60
Query 142 GGCGCCGGAGAGACAGTAAAGAATGGCGAAATTGATCATTTGCTTTCCGAACCGTCGGCT 201
|||||||||||||||||| |||| ||||| || |||| |||||||||||||||||||||
Sbjct 61 GGCGCCGGAGAGACAGTAGAGAACGGCGAGCTTCATCACTTGCTTTCCGAACCGTCGGCT 120
Query 202 CCGACTATTTCTCTCCCTACGGAATCTTTCCTCAGAGCAGCGACGTTACTCAAGAACCAG 261
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGACGATTTCTCTCCCTACGGAATCTTTCCTCAGAGCAGCGACGTTACTCAAGAACCAG 180
Query 262 GTTGTGGAGGCCACGTGGAAAGGTGGTGTCGAAGCTCTTGCCTCTGGTTCGGGTCCAGTG 321
|||| |||||||||||||||||| | |||||| | ||||||| |||||||| |||| |||
Sbjct 181 GTTGGGGAGGCCACGTGGAAAGGCGTTGTCGACGTTCTTGCCCCTGGTTCGAGTCCGGTG 240
Query 322 CTGGATCCGACTGTGTACACAGGACTACTCGGCACAGCGTTCACCTGCTTGAAGTCGTAC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGATCCGACTGTGTACACAGGACTACTCGGCACAGCGTTCACCTGCTTGAAGTCGTAC 300
Query 382 GAGGTAACGCGGAACCATCAAGATCTGCTAACTTGCGCAGAGATAATCGACACGTGTGCC 441
|| || ||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GAAGTCACGAGCAACCATCAAGATCTGCTAACTTGCGCTGAGATAATCGACACGTGTGCC 360
Query 442 AACGTTGCGCGTGCCACAACCAGGCACGTGACATTTTTATGTGGAAGAGGAGGAGTTTGT 501
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 361 AATGTTGCGCGTGCCACAACCAGGCACGTGACGTTTTTATGTGGAAGAGGAGGAGTTTAT 420
Query 502 ACGCTTGGTGCAATTGTAGCCAATTACAGAGGGGACCAATCAAAGCGTGACTTCTTCCTC 561
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGCTTGGTGCAATCGTAGCCAATTACAGAGGGGACCAATCAAAGCGTGACTTCTTCCTC 480
Query 562 GGTCTTTTTCTTGAGCTTGCAGAAGAGAGAGAGTTACCAGCAGGACCAGAGGAAGGAGGA 621
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GGTCTTTTTCTTGAGCTTGCAGAAGCGAGAGAGTTACCAGCAGGACCAGAGGAAGGAGGA 540
Query 622 TTTGGGATGTCATATGACCTTCTCTATGGAAGAGCGGGTTTCCTTTGGGCTGCTCTGTTC 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 TTTGGGATGTCATATGACCTTCTCTATGGAAGAGCGGGTTTCCTTTGGGCTGCTTTGTTC 600
Query 682 CTAAACCGATATCTCGGCCAAGGAACTGTTCCTGACCATCTCTTATCACCCATTGTTGCA 741
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 601 CTGAACCGATATCTCGGCCAAGGCACTGTTCCTGACCATCTCCTATCACCCATTGTTGCA 660
Query 742 GCCATCTTAGCCGGTGGGCGAGTTGGAGCTGCAGATCATGAAGCTTGTCCTCTGTTATAC 801
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GCCATCTTAGCCGGTGGACGAGTTGGAGCTGCAGATCATGAAGCTTGTCCTCTGCTATAC 720
Query 802 AGGTTTCACGGAACGCGATTTTGGGGTGCTGCGAATGGATTAGCTGGAATCTTGTATGTA 861
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 721 AGGTTTCACGGGACGCGATTTTGGGGTGCGGCTAATGGATTAGCTGGAATCTTGTATGTG 780
Query 862 TTGCTGCATTTTCCACTATCGGAAGAGGATGTTAAAGATGTTCAAGGGACATTGAGGTAT 921
||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 781 TTGCTACATTTCCCACTATCGGAAGAGGATGTGAAGGATGTTCAAGGGACATTGAGGTAC 840
Query 922 ATGATGAGTAATAGGTTTCCGAACAGCGGAAACTACCCGTGCAGCGAAGGGAATCCGAGG 981
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 ATGATGAGTAATAGGTTTCCGAACAGCGGTAACTACCCGTGCAGCGAAGGGAATCCGAGA 900
Query 982 GATAAGCTAGTCCAATGGGCTCATGGAGCAACCGGCATGGCCATTACTTTGGCTAAAGCA 1041
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATAAGCTGGTCCAATGGGCTCATGGAGCAACCGGCATGGCCATTACTTTGGCTAAAGCA 960
Query 1042 TCTCAGGTGTTTCCCAAGGAAAGGGATTTCCGCGAAGCAGCCATTGAAGCAGGAGAAGTA 1101
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 TCTCAGGTGTTTCCCAAGCAAAGGGATTTCCGTGAAGCAGCCATTGAAGCAGGAGAAGTA 1020
Query 1102 GTGTGGAAGAGTGGCTTGGTGAAGAAGGTAGGTTTAGCTGATGGAGTTGCTGGTAATGCC 1161
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 GTGTGGAAGAGTGGCTTGGTGAAGAAGGTAGGTTTAGCTGATGGAGTTGCTGGTAACGCC 1080
Query 1162 TACGCTTTCTTATCCCTTTATCGCTTAACCGGAGATGTTGTATATGAAGAGAGAGCAAAA 1221
|| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1081 TATGCTTTCTTATCGCTTTATCGGTTAACCGGAGATGTTGTATACGAAGAGAGAGCGAAA 1140
Query 1222 GCGTTTGCGAGTTACTTGTGCCGTGATGCGATAGAGCTCGTGAATATGACAAGCCAAGAA 1281
||||| || ||||||||||||| |||||| | ||| ||||||||||||||||| ||||||
Sbjct 1141 GCGTTCGCTAGTTACTTGTGCCATGATGCAAAAGATCTCGTGAATATGACAAGGCAAGAA 1200
Query 1282 ACAGAACATGATTATTCGCTATTCCGGGGACTAGCTGGACCAGTATGCCTCTGGTTCGAT 1341
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 ACAGAACATGATTATTCGCTTTTCCGGGGACTAGCTGGACCAGTATGTCTCTGGTTCGAT 1260
Query 1342 CTTGTGTCGCCGGTAGATTCTAAGTTTCCTGGTTATGAGATATAA 1386
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTTGTGTCTCCGGTAGATTCTAAGTTTCCTGGTTATGAGATATAA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5