BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65300.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496763 jgi|Araly1|496763|fgenesh2_kg.8__2579__AT5G65300.1 872 0.0
> Ahg496763 jgi|Araly1|496763|fgenesh2_kg.8__2579__AT5G65300.1
Length=576
Score = 872 bits (472), Expect = 0.0
Identities = 548/583 (94%), Gaps = 12/583 (2%)
Strand=Plus/Plus
Query 48 agaaaaatggaatgcagaaaaCACAACCACCAAGGCAACAGAGGAGTTTGTCCTTGTTGT 107
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGAAAAATGGAATGCAGAAAACACAACCACCAAAGCAACAGAGGAGTTTGTCCTTGTTGT 60
Query 108 TTAAGAGATAAACTCTCTCGATTACCTAATACTACGTCGTATTACATCGTTCACAGATCT 167
||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 61 TTAAGAGATCAACTCTCTCGGCTACCTAATACTACGTCGTATTACATCATTCACCGATCT 120
Query 168 TCTTCTTCTTCATCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 227
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTTCTTC--C-TCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 177
Query 228 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTTAGGGAAGCTTTAAATGGTAATCTG 287
||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 178 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTGAGGGAAGCGTTGAGTGGTAATCTG 237
Query 288 ATCGAAGCTTTAGGTGGAGGATT-AATGAAAAGCAGATCTATGGCTCATGTTCCCAAGGA 346
|| |||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||
Sbjct 238 ATTGAAGCTTTAGGTGGAGGATTGAA-GAAAAGCAGATCCATGGCGCATGTTCCCAAGGA 296
Query 347 TTATATTGTTAGGGATTTGACGAAGAAGAAGACGGAGAAATTGAAATCTACGACGGTTAA 406
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 297 TTATATTGTTAGGGATTCGACGAAGAAGAAGACGGAGAAATTGAAATCTACGTCGGTGAA 356
Query 407 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCG- 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCGT 416
Query 466 --ACGTCGGCGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGTCt 523
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 417 CGACGTCGGAGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGT-T 475
Query 524 ttttttCCTGAAACTTTTATTTTTGACGTGTACAGTTACAGATTAAGAAAGTAAAATGGT 583
|||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 476 TTTT--CCTGAAACGTTTATTTTTGATGTGTACAGTTACAGATAAAGAAAGTAAAATGGT 533
Query 584 G-AAAATAATGAAAGTGATTTCTCATTAATGAAAATGGAGATT 625
| |||||||||||||| |||||| |||||||||||| ||||||
Sbjct 534 GGAAAATAATGAAAGTCATTTCTGATTAATGAAAATAGAGATT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5