BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65300.1 Length=625 Score E Sequences producing significant alignments: (Bits) Value Ahg496763 jgi|Araly1|496763|fgenesh2_kg.8__2579__AT5G65300.1 872 0.0 > Ahg496763 jgi|Araly1|496763|fgenesh2_kg.8__2579__AT5G65300.1 Length=576 Score = 872 bits (472), Expect = 0.0 Identities = 548/583 (94%), Gaps = 12/583 (2%) Strand=Plus/Plus Query 48 agaaaaatggaatgcagaaaaCACAACCACCAAGGCAACAGAGGAGTTTGTCCTTGTTGT 107 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AGAAAAATGGAATGCAGAAAACACAACCACCAAAGCAACAGAGGAGTTTGTCCTTGTTGT 60 Query 108 TTAAGAGATAAACTCTCTCGATTACCTAATACTACGTCGTATTACATCGTTCACAGATCT 167 ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 61 TTAAGAGATCAACTCTCTCGGCTACCTAATACTACGTCGTATTACATCATTCACCGATCT 120 Query 168 TCTTCTTCTTCATCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 227 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTTCTTC--C-TCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 177 Query 228 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTTAGGGAAGCTTTAAATGGTAATCTG 287 ||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||| Sbjct 178 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTGAGGGAAGCGTTGAGTGGTAATCTG 237 Query 288 ATCGAAGCTTTAGGTGGAGGATT-AATGAAAAGCAGATCTATGGCTCATGTTCCCAAGGA 346 || |||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| Sbjct 238 ATTGAAGCTTTAGGTGGAGGATTGAA-GAAAAGCAGATCCATGGCGCATGTTCCCAAGGA 296 Query 347 TTATATTGTTAGGGATTTGACGAAGAAGAAGACGGAGAAATTGAAATCTACGACGGTTAA 406 ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || Sbjct 297 TTATATTGTTAGGGATTCGACGAAGAAGAAGACGGAGAAATTGAAATCTACGTCGGTGAA 356 Query 407 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCG- 465 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCGT 416 Query 466 --ACGTCGGCGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGTCt 523 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 417 CGACGTCGGAGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGT-T 475 Query 524 ttttttCCTGAAACTTTTATTTTTGACGTGTACAGTTACAGATTAAGAAAGTAAAATGGT 583 |||| |||||||| ||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 476 TTTT--CCTGAAACGTTTATTTTTGATGTGTACAGTTACAGATAAAGAAAGTAAAATGGT 533 Query 584 G-AAAATAATGAAAGTGATTTCTCATTAATGAAAATGGAGATT 625 | |||||||||||||| |||||| |||||||||||| |||||| Sbjct 534 GGAAAATAATGAAAGTCATTTCTGATTAATGAAAATAGAGATT 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22873750200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5