BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65310.1
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497511 jgi|Araly1|497511|fgenesh2_kg.666__2__AT5G65310.1 1746 0.0
Ahg496765 jgi|Araly1|496765|fgenesh2_kg.8__2581__AT5G65310.1 1744 0.0
> Ahg497511 jgi|Araly1|497511|fgenesh2_kg.666__2__AT5G65310.1
Length=1515
Score = 1746 bits (945), Expect = 0.0
Identities = 1121/1204 (93%), Gaps = 20/1204 (2%)
Strand=Plus/Plus
Query 178 TATTAGTCAATTCTCTGTTTCCATCTTATATGGATAGTCTAGACACAGAGCAAAGATCCT 237
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 129 TATTAGTCAATTCTCTGTTTCCATCTTTTATGGATAGTGTAGACACAGAGCAAAGATCCT 188
Query 238 TCTTTGGAGAAAAAGAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCTTTGGAGAAAAACAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 248
Query 298 GATAGATCTTAATCGATAACCATCTAGGCCTTGATCTAACCATTCA-ATATAAACTTTAT 356
| ||||||| |||||||||| || |||||||||||||||||||| | |||||||||| ||
Sbjct 249 GGTAGATCTGAATCGATAACGATATAGGCCTTGATCTAACCATT-ATATATAAACTTCAT 307
Query 357 TTCCTTCT----T-CTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGATCACG 411
|| ||||| | ||||| ||| | || |||||||||||||||||||||||| |||||
Sbjct 308 TT-CTTCTCAAGTAATTTTCAATCCCTATAGTTCCGACCAAACAAGATGAAGAGGTCACG 366
Query 412 TGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGACAAACA 471
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TGGAAGCTCCGATTCTTTAGCCGGTTTCTTACCAATTCGCCATTCTACAACAGACAAACA 426
Query 472 AATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCGCCGGAGACTACTCCCA 531
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 427 AATAAGTCCAAGACCAACAACCACTGGCTTTCTCTATTCCGGCGCCGGAGACTACTCGCA 486
Query 532 GATGTTTGACGCATTAGAAGACGACGGAAGTCTAGAGGACCTCGGCGGCGTTGGACACGC 591
|||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 487 GATGTTCGACGCATTAGAAGACGACGGAAGTCTAGAAGACATCGGCGGTGTTGGACACGC 546
Query 592 GTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGTTAGA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGTTAGA 606
Query 652 GAAGAATTTCGAGATTGATAACAAGTTAGAGCCAGAGAGGAAAGTGAAGCTGGCTCAAGA 711
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 607 GAAGAATTTTGAGATTGATAACAAGTTAGAGCCAGAAAGGAAAGTGAAGCTGGCCCAAGA 666
Query 712 GCTTGGGTTGCAGCCACGCCAAGTCGCGATCTGGTTTCAAAACCGCCGTGCTCGGTGGAA 771
||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 667 GCTTGGGTTGCAGCCGCGTCAAGTGGCGATCTGGTTTCAGAACCGCCGTGCTCGGTGGAA 726
Query 772 GACAAAGCAGCTTGAACGTGATTACGGCGTTCTTAAGTCAAACTTTGATGCACTCAAACG 831
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 727 GACAAAACAGCTTGAACGTGATTATGGCGTTCTTAAGTCAAACTTTGATGCACTCAAACG 786
Query 832 CAACCGCGACTCGCTTCAACGCGATAACGATTCACTCCTTGGACAGATTAAAGAGCTGAA 891
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 787 CAGCCGCGACTCGCTTCAACGCGATAACGATTCCCTCCTTGGACAGATTAAAGAGCTGAA 846
Query 892 AGCAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCGCTT-TAAAAG-CA 949
| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 847 AACAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCG-TTGAAAAAGCCA 905
Query 950 GTGGAAGCAAATCAATCGGTGATGGCTAATAATGAAGTCTTAGAGCTAAGCCACCGTTC- 1008
||||||||||||| |||||||||||| |||||||||| ||||||||| |||||| ||
Sbjct 906 -TGGAAGCAAATCAGGCGGTGATGGCTAGTAATGAAGTCGTAGAGCTAAACCACCG-TCT 963
Query 1009 TCCATCGCCACCACCGCATATTCCTACGGACGCTCCGACATCGGAGCTCGCATTCGAAAT 1068
||| |||| ||| ||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 964 TCCGCCGCCTCCAACGCATATTCCTACTGAAGATCCGACATCGGAGCTCGCATACGAAAT 1023
Query 1069 GTTTAGCATTTTTCCACGCACGGAAAACTTCAGAGACGATCCTGCCGATAGCA--G-CGA 1125
||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||
Sbjct 1024 GTTTAGCATTTTTCCACGCACCGAAAACTTCAGAGAAGATCCTGCCGATAGCAGCGACGA 1083
Query 1126 CTCAAGCGCGGTTTTGAACGAAGAGTATAGTCCCA-ATACGGTTGAAGCAGCTGGCGCAG 1184
|||||| |||||||||||||||||||||||||||| | || ||||||||||| ||| | |
Sbjct 1084 CTCAAGTGCGGTTTTGAACGAAGAGTATAGTCCCACA-ACCGTTGAAGCAGCGGGCACGG 1142
Query 1185 TGGCGGCCACGACTGTAGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAAATGG 1244
||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1143 TGGCGGCCACGGCGGTTGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAGATGG 1202
Query 1245 AAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATGAGC 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATGAGC 1262
Query 1305 AATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTAAAAGCATAG- 1363
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1263 AATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTGAAAGGGTAGG 1322
Query 1364 AAAA 1367
||||
Sbjct 1323 AAAA 1326
Score = 156 bits (84), Expect = 6e-37
Identities = 117/132 (89%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 12 tctctatctctctccctctctatctctctctTACCAATTTCCATTTCTCGGGGGAAAATA 71
||||| || |||||||| |||||||||||||||| |||||| |||||||||||| ||| |
Sbjct 1 TCTCTCTCCCTCTCCCTATCTATCTCTCTCTTACAAATTTCGATTTCTCGGGGG-AAA-A 58
Query 72 ATAATACGACTTTTGAAA--TCTCTCACTAATATTTCCCAAGAAAACCTGATGAATTAAA 129
|| ||| ||||||||||| ||| || |||||| ||||| ||||||||||||||||||||
Sbjct 59 AT-ATAAGACTTTTGAAACCTCTATCGCTAATACTTCCCGAGAAAACCTGATGAATTAAA 117
Query 130 AGTTCATATTTT 141
||||||||||||
Sbjct 118 AGTTCATATTTT 129
Score = 124 bits (67), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1571 aaaaaaaa-TATGTGACGAAGAAATCGTTTTTTCGTCGTTTATAATATTATTT-GAATAA 1628
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1439 AAAAAAAATTATGTGACAAAGAAATCGTTTTTTCGTCGTTTATAATATTATTTTGAATAA 1498
Query 1629 TTTTACTTAGGTGAATG 1645
|||||||||||||||||
Sbjct 1499 TTTTACTTAGGTGAATG 1515
Score = 80.5 bits (43), Expect = 4e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1496 GTTCCATGCACGTGTGGCCGTAATCTTTTCAAGGTTGAATGAGAGAGGACAAAAAA 1551
|||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1386 GTTCCATGCACGTGTGGCCGTAATCTTTCCAAGGTT-AA-GAGAGGGGACAAAAAA 1439
> Ahg496765 jgi|Araly1|496765|fgenesh2_kg.8__2581__AT5G65310.1
Length=1519
Score = 1744 bits (944), Expect = 0.0
Identities = 1123/1207 (93%), Gaps = 22/1207 (2%)
Strand=Plus/Plus
Query 178 TATTAGTCAATTCTCTGTTTCCATCTTATATGGATAGTCTAGACACAGAGCAAAGATCCT 237
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 129 TATTAGTCAATTCTCTATTTCCATCTTATATGGATAGTGTAGACACAGAGCAAAGATCCT 188
Query 238 TCTTTGGAGAAAAAGAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCTTTGGAGAAAAACAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 248
Query 298 GATAGATCTTAATCGATAAC--CAT--CTAGGCCTTGATCTAACCATTCA-ATATAAACT 352
| ||||||| |||||||||| || ||||||||||||||||||||| | |||||||||
Sbjct 249 GGTAGATCTGAATCGATAACGATATAGCTAGGCCTTGATCTAACCATT-ATATATAAACT 307
Query 353 TTATTTCCTTCT----T-CTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGAT 407
| |||| ||||| | ||||| ||| | || |||||||||||||||||||||||| |
Sbjct 308 TCATTT-CTTCTCAAGTAATTTTCAATCCCTATAGTTCCGACCAAACAAGATGAAGAGGT 366
Query 408 CACGTGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGACA 467
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 367 CACGTGGAAGCTCCGATTCTTTAGCCGGTTTCTTACCAATTCGCCATTCTACAACAGACA 426
Query 468 AACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCGCCGGAGACTACT 527
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 427 AACAAATAAGTCCAAGACCAACAACCACTGGCTTTCTCTATTCCGGCGCCGGAGACTACT 486
Query 528 CCCAGATGTTTGACGCATTAGAAGACGACGGAAGTCTAGAGGACCTCGGCGGCGTTGGAC 587
| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 487 CGCAGATGTTCGACGCATTAGAAGACGACGGAAGTCTAGAAGACATCGGCGGTGTTGGAC 546
Query 588 ACGCGTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGT 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ACGCGTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGT 606
Query 648 TAGAGAAGAATTTCGAGATTGATAACAAGTTAGAGCCAGAGAGGAAAGTGAAGCTGGCTC 707
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 607 TAGAGAAGAATTTTGAGATTGATAACAAGTTAGAGCCAGAAAGGAAAGTGAAGCTGGCCC 666
Query 708 AAGAGCTTGGGTTGCAGCCACGCCAAGTCGCGATCTGGTTTCAAAACCGCCGTGCTCGGT 767
||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 667 AAGAGCTTGGGTTGCAGCCGCGTCAAGTGGCGATCTGGTTTCAGAACCGCCGTGCTCGGT 726
Query 768 GGAAGACAAAGCAGCTTGAACGTGATTACGGCGTTCTTAAGTCAAACTTTGATGCACTCA 827
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 727 GGAAGACAAAACAGCTTGAACGTGATTATGGCGTTCTTAAGTCAAACTTTGATGCACTCA 786
Query 828 AACGCAACCGCGACTCGCTTCAACGCGATAACGATTCACTCCTTGGACAGATTAAAGAGC 887
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 AACGCAGCCGCGACTCGCTTCAACGCGATAACGATTCCCTCCTTGGACAGATTAAAGAGC 846
Query 888 TGAAAGCAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCGCTT-TAAAA 946
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 847 TGAAAACAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCG-TTGAAAAA 905
Query 947 G-CAGTGGAAGCAAATCAATCGGTGATGGCTAATAATGAAGTCTTAGAGCTAAGCCACCG 1005
| || ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 906 GCCA-TGGAAGCAAATCAGGCGGTGATGGCTAGTAATGAAGTCTTAGAGCTAAACCACCG 964
Query 1006 TTCTCCATCGCCACCACCGCATATTCCTACGGACGCTCCGACATCGGAGCTCGCATTCGA 1065
| |||| |||| ||| ||||||||||||| || | |||||||||||||||||||| |||
Sbjct 965 TCCTCCGCCGCCGCCAACGCATATTCCTACTGAAGATCCGACATCGGAGCTCGCATACGA 1024
Query 1066 AATGTTTAGCATTTTTCCACGCACGGAAAACTTCAGAGACGATCCTGCCGATAGCA--G- 1122
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1025 AATGTTTAGCATTTTTCCACGCACCGAAAACTTCAGAGAAGATCCTGCCGATAGCAGCGA 1084
Query 1123 CGACTCAAGCGCGGTTTTGAACGAAGAGTATAGTCCCA-ATACGGTTGAAGCAGCTGGCG 1181
||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |||
Sbjct 1085 CGACTCAAGTGCGGTTTTGAACGAAGAGTATAGTCCCACA-ACCGTTGAAGCAGCGGGCA 1143
Query 1182 CAGTGGCGGCCACGACTGTAGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAAA 1241
| |||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1144 CGGTGGCGGCCACGGCGGTTGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAGA 1203
Query 1242 TGGAAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TGGAAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATG 1263
Query 1302 AGCAATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTAAAAGCAT 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1264 AGCAATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTGAAAGGGT 1323
Query 1362 AG-AAAA 1367
|| ||||
Sbjct 1324 AGGAAAA 1330
Score = 156 bits (84), Expect = 6e-37
Identities = 117/132 (89%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 12 tctctatctctctccctctctatctctctctTACCAATTTCCATTTCTCGGGGGAAAATA 71
||||| || |||||||| |||||||||||||||| |||||| |||||||||||| | | |
Sbjct 1 TCTCTCTCCCTCTCCCTATCTATCTCTCTCTTACAAATTTCGATTTCTCGGGGG-ATA-A 58
Query 72 ATAATACGACTTTTGAAATCTC--TCACTAATATTTCCCAAGAAAACCTGATGAATTAAA 129
||| || ||||||||||||||| || |||||| ||||| ||||||||||||||||||||
Sbjct 59 ATATTA-GACTTTTGAAATCTCTATCGCTAATACTTCCCGAGAAAACCTGATGAATTAAA 117
Query 130 AGTTCATATTTT 141
||||||||||||
Sbjct 118 AGTTCATATTTT 129
Score = 124 bits (67), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1571 aaaaaaaa-TATGTGACGAAGAAATCGTTTTTTCGTCGTTTATAATATTATTT-GAATAA 1628
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1443 AAAAAAAATTATGTGACAAAGAAATCGTTTTTTCGTCGTTTATAATATTATTTTGAATAA 1502
Query 1629 TTTTACTTAGGTGAATG 1645
|||||||||||||||||
Sbjct 1503 TTTTACTTAGGTGAATG 1519
Score = 80.5 bits (43), Expect = 4e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1496 GTTCCATGCACGTGTGGCCGTAATCTTTTCAAGGTTGAATGAGAGAGGACAAAAAA 1551
|||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1390 GTTCCATGCACGTGTGGCCGTAATCTTTCCAAGGTT-AA-GAGAGGGGACAAAAAA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5