BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65330.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496768 jgi|Araly1|496768|fgenesh2_kg.8__2584__AT5G65330.1 917 0.0
> Ahg496768 jgi|Araly1|496768|fgenesh2_kg.8__2584__AT5G65330.1
Length=1089
Score = 917 bits (496), Expect = 0.0
Identities = 672/753 (89%), Gaps = 27/753 (4%)
Strand=Plus/Plus
Query 293 ATTGGTATCCAAACTTTGATCATTACTCTCCTCAACAACTCTCTCAATTGATTCAGTCCT 352
|||||||||| |||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 341 ATTGGTATCCGAACTTTGATCATTACTCTCCCCACCAACTCTCTCAATTGAATCAGTCCT 400
Query 353 TAGAACGGACTCTTTCTACTCTGCAAGAAAGGCTTCGTATTGTTGAGGCGCAGAAACTAC 412
|||||| |||||| || ||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 401 TAGAACAGACTCTCTCAACTTTGCAAGAAAGGCTTCGTTTTGTTGAGGCGCAGAAACAAC 460
Query 413 AGAACACAAACTTGG-TGCATCAGAGTTTAACACCATCGTATCTGAACCAGACCCAACAC 471
|||||| |||||||| || |||||| |||||||||||||||||||||||||| |||||||
Sbjct 461 AGAACATAAACTTGGTTG-ATCAGAATTTAACACCATCGTATCTGAACCAGAACCAACAC 519
Query 472 TTGAATCCTAGCAAGTTCTCGCTGTTTATGTACAACCATGGAGATGCTACTCTCTCACAA 531
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 520 TTGAATCCTAGCAAGTTCTCGCTGTATATGTACAACCATGGAGATGCTACTCTCTCACAA 579
Query 532 CTCCCACTGTCTGCTCCACACTCCAATCAACTCATCAATTACCAGAATCACTTGATGCAG 591
||||||||||||||| |||||||| | ||||||| ||||||||| |||||||||||||||
Sbjct 580 CTCCCACTGTCTGCTTCACACTCCGACCAACTCACCAATTACCAAAATCACTTGATGCAG 639
Query 592 CA--------T----GGTTTTGGTCAGAACATGTGTTCGGACAACATCACCAACAACAA- 638
|| | ||||||||||||||| |||||| || |||||||||||||| |||
Sbjct 640 CAGCAGGAGCTTTATGGTTTTGGTCAGAACTTGTGTTTGGGCAACATCACCAACA-CAAA 698
Query 639 CTTTGAACATCCTGGCGTGTCAAACACACAAGACTACTCACCGTTACTTTCGGTACAAGC 698
|||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 699 CTTTCAACGTCCTTACGTGTCAAACACACAAGACTACTCACCGTTACTTTCAGCACAAGC 758
Query 699 ATCTGCAGTGAATAACTACGGGTTGAATAATCACTTGATGCAGCAACAGGATCAGCTTCA 758
||||| |||||||||||||||||||||||||||| ||||||| ||||||| | |||||
Sbjct 759 ATCTGTGGTGAATAACTACGGGTTGAATAATCACTCGATGCAGAAACAGGA-C--CTTCA 815
Query 759 TGGTTTTGATCAGAACATGTGTATGGTGAGTGAAATCATCAACAACAACAACG-----G- 812
|||| |||||| |||| | |||||| |||||||||||||||||||||||||| |
Sbjct 816 TGGTATTGATCGGAACGTATGTATGTTGAGTGAAATCATCAACAACAACAACAACAACGA 875
Query 813 TCTACAACATCCTAATCTCTCAAACACGGTTCCACATGAATTCTCTTCTGATTTCAACCA 872
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||
Sbjct 876 TCTACAACATCCTAATCTCTCAAACAAGATTCCACATGAATTCTCTTCTGATTTCCAGCA 935
Query 873 GAACCCTTATGGTAATGCGGTCGGTAACATTAGCTTCTCTCAAGACATGTTTTCAAGCTA 932
|||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 936 GAACCCTTATTTTAATACGGTCGGTAACACTAGCTTCTCTCAAGATATGTTTTCAAGCTA 995
Query 933 TGATGCGAGCAGTCTGC-TACAGACATCTTCTCTGCCACCTCTCCACAACATTCCTAGCA 991
||||||||||||| ||| | ||| |||||||||||||||| || ||||||||||||| ||
Sbjct 996 TGATGCGAGCAGTTTGCAT-CAGGCATCTTCTCTGCCACCCCTTCACAACATTCCTAACA 1054
Query 992 GTTATTGTTTTCCTGGCAACTCAAGACTTCTCT 1024
||||||||||| ||| |||||||||||||||||
Sbjct 1055 GTTATTGTTTTTCTGACAACTCAAGACTTCTCT 1087
Score = 411 bits (222), Expect = 7e-114
Identities = 248/261 (95%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 11 CTTCTTCTTCTTCTTCGTCACGTAATTCAACAAGTTTAACAAATAGACTTAAAACCATCT 70
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 20 CTTCTTCTTCTTCTTCGTCTCGTAATTCAACAAGTTTAACAAACAGACTTAAAACCATCT 79
Query 71 TCAAGAAAGCTGAAGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTACG 130
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 80 TCAAGAAAGCTTTGGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTATG 139
Query 131 GACCAGACGGTGAACTGAGAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTT 190
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GACCAGGCGGTGAACTAAAAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTT 199
Query 191 TGAGGTATAAAGAGGCCAGAAAACGCAAGAAGAGCCGCAATCTTCATGAGTTCCTCGAGA 250
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 200 TGAGGTATAAAGAGGCAAGAAAACGCAAGAAGAGCCTCAATCTTCACGAGTTCCTCGACA 259
Query 251 AGGAGAAGGACAAGGACAAGG 271
|||||||||||||||||||||
Sbjct 260 AGGAGAAGGACAAGGACAAGG 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5