BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65340.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951380 jgi|Araly1|951380|scaffold_803267.1 1179 0.0
> Ahg951380 jgi|Araly1|951380|scaffold_803267.1
Length=803
Score = 1179 bits (638), Expect = 0.0
Identities = 752/806 (93%), Gaps = 12/806 (1%)
Strand=Plus/Plus
Query 27 AACTCCCaaaaaaaaaCCATGTCCGCCTTCCCCACAAACCCTTACCGTCGCCGCCTAGCT 86
||||||| ||||||||||||| ||||||||||||||||| |||||||||| || ||
Sbjct 5 AACTCCC--AAAAAAACCATGT---CCTTCCCCACAAACCCTCACCGTCGCCGGCTTGCC 59
Query 87 TCAACCACCACAAGCGCAACGGTAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 146
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 60 TCAACCACCACAAGCGCAACCGCAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 119
Query 147 CTCCTTCGCACCATCGCCCAACTTCTCATCCCATCTTGTTACTGCACAATCGTCGATCCA 206
|||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 120 CTCCTTCGAACCATCGTCCAACTTCTCATCCCATCTTGTTACTGCACAATCATTGATCCA 179
Query 207 AATGATAGTCAAGAAGACAAATTATCTCACCGCCAAATTAAACCAAGAACCTCTTCCGCC 266
||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 180 AATGATATTCATGAAGACAAATTATCTCACCGCCAAATCAAACCAAGAACCTCTTCCGTC 239
Query 267 TCCTCAACCGCCACAAACTCCACTTTTACCGGAACCATATTCGGTTTCCGTCGTGGCAAA 326
|| |||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 240 TCTTCAACCGCCATAAACTCCAGTTTTACTGGAACCATATTCGGTTTCCGCCGTGGCAAA 299
Query 327 GTAAACTTCTGCATCCAAGCAACAAACTCCAAAACCCTAAACCCAATCATTGTCCTCTTA 386
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 300 GTAAACTTTTGCATCCAAGCAACAAACTCGAAAACACTAAACCCAATCATTGTCCTCTTA 359
Query 387 GAGCTCACTGTCCCTACCGAGGTATTAGCCCGCGAAATGCAAGGAGGCGTGCTCAGGATC 446
||||| | ||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 360 GAGCTTATTGTCCCTACTGAGGTATTAGCCCGCGAAATGGGAGGAGGCGTGCTAAGGATC 419
Query 447 GCTCTCGAATCAAACAATAACGACGGATATGATTCACATGAAGATTCTTC--C-TCTTCA 503
||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||
Sbjct 420 GCTCTCGAATCAAACAATAACGAGGGATATGGTTCACATGAAGATTCTTCTTCTTCTTCA 479
Query 504 CTTCTTACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTCTTACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 539
Query 564 AAACGAGAGCCTT-CGAAGTCTGAGCTAGCTGCGTTGAAGGTGCTTACTCCGGTGGCTGA 622
|||||| |||||| | ||| ||||||| || ||||||||||||||||| |||||||||||
Sbjct 540 AAACGACAGCCTTCCAAAG-CTGAGCTCGCCGCGTTGAAGGTGCTTACCCCGGTGGCTGA 598
Query 623 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 658
Query 683 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTCCATCTCGT 742
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTTCATCTCGT 718
Query 743 TGACCCACGTGGGATTATCGGTCAAGAACTAAGTATCTTCTTTTCTAGATCGTCAA-AAA 801
|||||| || ||||||||||| |||||||||||||||||||||| ||||||||||| |||
Sbjct 719 TGACCCTCGCGGGATTATCGGACAAGAACTAAGTATCTTCTTTTTTAGATCGTCAAGAAA 778
Query 802 GATGATCTTGGATCGTTTTGTGTGTT 827
||||||||| |||||||||| ||||
Sbjct 779 -ATGATCTTGAATCGTTTTGTATGTT 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5