BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65340.1 Length=1092 Score E Sequences producing significant alignments: (Bits) Value Ahg951380 jgi|Araly1|951380|scaffold_803267.1 1179 0.0 > Ahg951380 jgi|Araly1|951380|scaffold_803267.1 Length=803 Score = 1179 bits (638), Expect = 0.0 Identities = 752/806 (93%), Gaps = 12/806 (1%) Strand=Plus/Plus Query 27 AACTCCCaaaaaaaaaCCATGTCCGCCTTCCCCACAAACCCTTACCGTCGCCGCCTAGCT 86 ||||||| ||||||||||||| ||||||||||||||||| |||||||||| || || Sbjct 5 AACTCCC--AAAAAAACCATGT---CCTTCCCCACAAACCCTCACCGTCGCCGGCTTGCC 59 Query 87 TCAACCACCACAAGCGCAACGGTAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 146 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 60 TCAACCACCACAAGCGCAACCGCAGCCGTAGACTGCCATAAACAAGTTCGTTCATGGCGG 119 Query 147 CTCCTTCGCACCATCGCCCAACTTCTCATCCCATCTTGTTACTGCACAATCGTCGATCCA 206 |||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||| Sbjct 120 CTCCTTCGAACCATCGTCCAACTTCTCATCCCATCTTGTTACTGCACAATCATTGATCCA 179 Query 207 AATGATAGTCAAGAAGACAAATTATCTCACCGCCAAATTAAACCAAGAACCTCTTCCGCC 266 ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 180 AATGATATTCATGAAGACAAATTATCTCACCGCCAAATCAAACCAAGAACCTCTTCCGTC 239 Query 267 TCCTCAACCGCCACAAACTCCACTTTTACCGGAACCATATTCGGTTTCCGTCGTGGCAAA 326 || |||||||||| |||||||| |||||| |||||||||||||||||||| ||||||||| Sbjct 240 TCTTCAACCGCCATAAACTCCAGTTTTACTGGAACCATATTCGGTTTCCGCCGTGGCAAA 299 Query 327 GTAAACTTCTGCATCCAAGCAACAAACTCCAAAACCCTAAACCCAATCATTGTCCTCTTA 386 |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 300 GTAAACTTTTGCATCCAAGCAACAAACTCGAAAACACTAAACCCAATCATTGTCCTCTTA 359 Query 387 GAGCTCACTGTCCCTACCGAGGTATTAGCCCGCGAAATGCAAGGAGGCGTGCTCAGGATC 446 ||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||| Sbjct 360 GAGCTTATTGTCCCTACTGAGGTATTAGCCCGCGAAATGGGAGGAGGCGTGCTAAGGATC 419 Query 447 GCTCTCGAATCAAACAATAACGACGGATATGATTCACATGAAGATTCTTC--C-TCTTCA 503 ||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||| Sbjct 420 GCTCTCGAATCAAACAATAACGAGGGATATGGTTCACATGAAGATTCTTCTTCTTCTTCA 479 Query 504 CTTCTTACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CTTCTTACAACACCTTTATGGAACATGTATTGCAACGGTCGGAAAGTTGGATTCGCCATC 539 Query 564 AAACGAGAGCCTT-CGAAGTCTGAGCTAGCTGCGTTGAAGGTGCTTACTCCGGTGGCTGA 622 |||||| |||||| | ||| ||||||| || ||||||||||||||||| ||||||||||| Sbjct 540 AAACGACAGCCTTCCAAAG-CTGAGCTCGCCGCGTTGAAGGTGCTTACCCCGGTGGCTGA 598 Query 623 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGGAGCCGGAGTTGTTAACGGAGAAGAGATAAACCGAGAGAAAAGTGATCATATGATGTA 658 Query 683 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTCCATCTCGT 742 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 659 CTTAAGAGCGAGTTTCAAACGAGTTTTTGGTTCGTTTGATTCGGAATCTTTTCATCTCGT 718 Query 743 TGACCCACGTGGGATTATCGGTCAAGAACTAAGTATCTTCTTTTCTAGATCGTCAA-AAA 801 |||||| || ||||||||||| |||||||||||||||||||||| ||||||||||| ||| Sbjct 719 TGACCCTCGCGGGATTATCGGACAAGAACTAAGTATCTTCTTTTTTAGATCGTCAAGAAA 778 Query 802 GATGATCTTGGATCGTTTTGTGTGTT 827 ||||||||| |||||||||| |||| Sbjct 779 -ATGATCTTGAATCGTTTTGTATGTT 803 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40677152439 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5