BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65370.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358736 jgi|Araly1|358736|fgenesh1_pg.C_scaffold_8002523 1197 0.0
> Ahg358736 jgi|Araly1|358736|fgenesh1_pg.C_scaffold_8002523
Length=888
Score = 1197 bits (648), Expect = 0.0
Identities = 814/894 (91%), Gaps = 12/894 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAA-TTAGCGACCTTGAATGGCATATTGAAAGACGAAGCCTCACAGATGAAACT 59
||||||||| | | | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGGAAAACTCA-CAACCTTGAATGGCATATTGAAAGACGAAGCGTCACAAATGAAACT 59
Query 60 CAATGTGGTTCATTTGTGTAGCTCCGTGAATGCCAAAACCATTGATTTAGCTCTCTTGAA 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 CAATGTGGTTCATTTGTGTAGCTCCGTGAATGCCAAAACCATTGACTTAGCTCTCTTGAA 119
Query 120 AGCCACGTCTCATACCTCAAACAACCCGCCTTCAGACAAATACGTCACTTTTCTCCAATC 179
||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||||||||
Sbjct 120 AGCCACGTCTCATACCTCACACAATCCACCTTCGGACAAATACGTCACTTTCCTCCAATC 179
Query 180 AACTATTGACACGTGTTACGGTCCTGATACTGTTGATGCGATCTTGCATAGGCTGCGTGT 239
||||||||||||||| ||||||||||| ||||| | ||| ||| | |||||||| ||| |
Sbjct 180 AACTATTGACACGTGCTACGGTCCTGAGACTGTCGCTGCCATCCTACATAGGCTCCGTTT 239
Query 240 GACGACGGACGTATGTGTGGCTGCTAAATGTCTCATTCTTCTCCATAAAATGGTTAAATC 299
|||||||||| || ||||||||||||||||| |||||||||||||| ||| ||||| |
Sbjct 240 AACGACGGACGCGTGCGTGGCTGCTAAATGTCTTATTCTTCTCCATAAGATGATTAAAAC 299
Query 300 AGAAAGTGGGTATAATGGAGAAGATAGTCTTCGGAACAATATTAATCATCGTACTTTGAT 359
|||||||||||||||||||||||||| ||||||| || || || |||||||||||||||
Sbjct 300 AGAAAGTGGGTATAATGGAGAAGATAATCTTCGGGACTGTAATAGTCATCGTACTTTGAT 359
Query 360 TTATACTCAAGGAGGGAGTAATCTTAAATTGAAT-GATCTTAATGTAAATTCATCTCGTT 418
||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 360 TTATAATCAAGGAGGGAGTAATCTTAAATTGAATAG-TCTCAATGTAAATTCATCTCGTT 418
Query 419 TTACTAGAGAGTTGACTCCATGGGTTCAATGGTACAAACAATATCTAGATTGTTACTTAT 478
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 419 TTACTAGAGAGTTGTCTCCATGGGTTCAATGGTACCAACAGTATCTAGATTGTTATTTAT 478
Query 479 CTATTGCGGAGGTTTTAGGTATTACTCCAAACATAAAAGaaaaaa-aCGAAGATAAGCGT 537
|||||||||| |||||||| ||||||||||||||||||| |||| | ||||||||||||
Sbjct 479 CTATTGCGGAAGTTTTAGGCGTTACTCCAAACATAAAAGACAAAACA-GAAGATAAGCGT 537
Query 538 TTGGAGACTCAGCGAGTCTCGTCTTACCCAA-TGGATTGCATTCTCAAACAAATTGATTT 596
||||||||||| |||||||| |||||| ||| || |||||||| ||||||||||||||||
Sbjct 538 TTGGAGACTCAACGAGTCTCTTCTTACACAACTG-ATTGCATTTTCAAACAAATTGATTT 596
Query 597 CCTAGTAGAACTATTCGAACATATAAGTGATAGGCCAAAAGCTCCA-CAGTCGAAGCTGA 655
||||||||| || ||||||||||||||||| ||||||||| ||||| | |||||||||||
Sbjct 597 CCTAGTAGATCTTTTCGAACATATAAGTGACAGGCCAAAAACTCCAAC-GTCGAAGCTGA 655
Query 656 ACAAAATCGTTATTGAAATGACAGAACTAATGGTACAAGACTACTTCTCCGCCATAAGAT 715
|||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||| ||
Sbjct 656 ACAAAATCATTATTGAGATGATAGAACTAATGGTACAAGACTACTTCTCTGTCATAAAAT 715
Query 716 TGATGAGGATAAGATTTGAAGAATTGAACGTA-AGAGTAGCTAAACCTAACGAGTTGGTT 774
|||| |||||||| |||||||||||||||| | |||||||||||| || || ||||||||
Sbjct 716 TGATCAGGATAAGGTTTGAAGAATTGAACG-AGAGAGTAGCTAAATCTTACCAGTTGGTT 774
Query 775 CCGGTTTTGGAGAAGCTTGAAAACTGCAAGGAGGGTTTGAGCGAGTTTTCTTGGCGAAGC 834
||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 775 CCGGTTTTGGAGAGGCTTGAAAATTGCAAGGAGGGTTTGAACGAGTATTCTTGGCGAAGC 834
Query 835 AAGTATTTGATTGCAGATTTTTGGTATTTGGTATCGAAATTAAAAGATATGTAA 888
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 AAGTATTTGATTGAAGATTTTTGGTGTTTGGTATCGAAATTAAAAGATATGTAA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5