BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65380.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1 2750 0.0
> Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1
Length=1743
Score = 2750 bits (1489), Expect = 0.0
Identities = 1664/1748 (95%), Gaps = 13/1748 (1%)
Strand=Plus/Plus
Query 2 tctctcgtcttcaccattcttctcacttcttcttttctccttatatttcatttcttcCAC 61
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1 TCTCTCGTCTTCACCATTCTTCTCACTGCTTCTTTTCTCCTTATATTTCATTTCGTCCAC 60
Query 62 ATAACTaaaaaaaaaaGGAATTAGCGATGAGGGGAGGTGATGGAGAAGAAGGATCGGAGT 121
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 61 ATAACT--AAAAAAAAGGAATTAGCGATGAGAGGAAGTGGCGGAGAAGAAGGATCGGAGT 118
Query 122 CAAGAGTTGCACTGTTGAAAAGTCCTCACACGGCGGAGGAAGACGGTGAAGGATTGAAGG 181
| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 119 CGAGAGTTGCACTGTTGAAAAGTCCTCACACGGGGGAAGAAGACGGTGAAGGATTGAAGA 178
Query 182 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATAGTTGGTCCGGCCATATTCAGTC 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATCGTTGGTCCGGCCATATTCAGTC 238
Query 242 GAGTAACGACATATTCGATGCTTGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 301
|| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 239 GAATTACGACATATTCGATGCTTATCATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 298
Query 302 TTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 361
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGAACTCGCCGCCATCTCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 358
Query 362 TGCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCGAAGAAAT 421
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 TGCTTGGAATGGCGAGCGCGTTGGAAACGCTGTGTGGGCAAGCGTTTGGAGCGAAGAAAT 418
Query 422 ATCATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGCTGTGTCT 481
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 ATTATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGTTGTGTCT 478
Query 482 TGTTATTACCAACTTATATTTTCACTACTCCGGTTCTTAAATTTCTTGGTCAACCGGACG 541
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 479 TGTTATTACCAACTTATATTTTCACTACTCCAGTTCTCAAATTTCTTGGTCAACCGGACG 538
Query 542 ATATCGCTGAGCTGTCCGGTGTTGTCGCCATTTGGGTCATACCGCTTCATTTCGCCTTCA 601
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 ATATCGCTGAGCTTTCCGGTGTTGTCGCCATTTGGGTCATACCTCTTCATTTCGCCTTCA 598
Query 602 CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAGTGACTGCGT 661
|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 599 CTTTCTCTTTTCCCCTTCAACGTTTCCTCCAGTGCCAGCTCAAAAACCAAGTGACTGCGT 658
Query 662 ATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGC 721
|||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 659 ATGCCGCAGCCGTTGCATTGGTAGTTCACATTTTAGTGTGTTGGTTGTTCGTGGACGGAC 718
Query 722 TTAAACTAGGAGTCGTGGGGACTGTAGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 781
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 TTAAACTAGGAGTCGTCGGGACTGTGGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 778
Query 782 TTATTCTGTTAGTTTACTCTACTTGTGGTGGTTGTCCGCTTACTTGGACCGGCTTATCCT 841
||||||| || ||||||||||||||||| |||||||| ||||||||||||||| | ||||
Sbjct 779 TTATTCTATTGGTTTACTCTACTTGTGGCGGTTGTCCACTTACTTGGACCGGCCTCTCCT 838
Query 842 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCAGGCGTCATGC 901
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCCGGCGTCATGC 898
Query 902 TCTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAAAATG 961
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 TTTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAGAATG 958
Query 962 CTCGAATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1021
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTCGCATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1018
Query 1022 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTCCGTGTGGCGAACGAATTAGGAGCTGGTA 1081
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTTCGTGTGGCGAACGAATTAGGAGCTGGTA 1078
Query 1082 ATGGTAAAGGAGCAAGATTTGCGACGATTGTATCGGTAACACAATCGTTGATAATCGGAT 1141
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 ATGGCAAAGGAGCAAGATTTGCGACGATTGTATCAGTAACACAATCGTTGATAATCGGAT 1138
Query 1142 TGtttttttGGGTGCTAATAATGCTTCTCCATAACCAAATCGCATGGATCTTCTCTTCGA 1201
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1139 TGTTTTTCGGGGTGCTAATAATGCTTCTCCATACCCAAATCGCATGGATCTTCTCTTCGA 1198
Query 1202 GTGTAGCCGTCTTAGACGCCGTCAATAAACTCTCACTTCTGCTAGCTTTCACCGTTCTTC 1261
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1199 GTGTAGCCGTCTTAGACGCCGTTAATAAACTTTCACTTCTGTTAGCTTTCACCGTTCTTC 1258
Query 1262 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTACG 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTATG 1318
Query 1322 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1378
Query 1382 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGGTGGTATGATTTTTGGAGGAACCG 1441
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1379 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGCTGGTATGATTTTTGGAGGAACCG 1438
Query 1442 CTGTTCAAACCATGATCTTAAG-TTTTATCACAATGAGATGTGACTGGGAAAAAGAGGCG 1500
|||||||||| ||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct 1439 CTGTTCAAACAATGATCTTA-GCTTTTATTACAATGAGATGTGATTGGGAAAAAGAGGCG 1497
Query 1501 CAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1560
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CAGAAAGCAAGTGCTCGTGTTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1557
Query 1561 TTGAATCAACTATTAAATAATTTTGCAGCATAATATGGTTTTGGAAAACTGGTGTATGTT 1620
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1558 TTGAGTCAACTATTAAATAATTTTGCAGCATAATTTTGTTTTGGAAAACTGGTGTATGCT 1617
Query 1621 TTGTATCCAAATGTGATACAACATATTTAGAGCCGGTTCATAGATTACATA-GGA-TC-G 1677
| ||||| ||||||||||||| || || |||||||||| |||||||| ||| || || |
Sbjct 1618 T-GTATCGAAATGTGATACAATATCTT-AGAGCCGGTTTATAGATTAAATATGGTCTCTG 1675
Query 1678 ----CTGCAATTACTGCAAAATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1733
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TAAACTGCAATTACTGCAACATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1735
Query 1734 ATTATTAG 1741
||||||||
Sbjct 1736 ATTATTAG 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5