BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65390.1

Length=755
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951383 jgi|Araly1|951383|scaffold_803270.1                        494    5e-139


> Ahg951383 jgi|Araly1|951383|scaffold_803270.1
Length=419

 Score =  494 bits (267),  Expect = 5e-139
 Identities = 383/436 (88%), Gaps = 19/436 (4%)
 Strand=Plus/Plus

Query  43   TCTTTAGAGAGAGTGGAAAAAATGAATTCGAAGATCATCGAAGCTTTCTTCATCGTTGCT  102
            |||||||| ||||   |||||||||||||||||||| | |||||||||||||| ||||||
Sbjct  1    TCTTTAGATAGAGAACAAAAAATGAATTCGAAGATCTTTGAAGCTTTCTTCATTGTTGCT  60

Query  103  CTCTTCACTACCTCATGCCTCGCTCAAGCTCCAGCTCCTTCTCCAACCACCACCGTCACT  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  61   CTCTTCACTACCTCATGCCTCGCTCAAGCTCCAGCTCCTTCTCCAACCACCACCGTCA--  118

Query  163  CCTCCTCCCGTTGCCACTCCACCACCCGCCGCAACTCCCGCTCCGACCACCACTCCACCA  222
             ||||| ||   |      | || || |||||||||||| ||||||||||||||||||||
Sbjct  119  -CTCCT-CC---G------C-CC-CCTGCCGCAACTCCCTCTCCGACCACCACTCCACCA  165

Query  223  CCTGCCGTCTCCCCTGCCCCCACCTCTTCTCCTCCGTCTTCAGCTCCTTCTCCGTCGTCT  282
            ||||| | | |||||||||| ||| || |||||||||||||  |||||||||||||||||
Sbjct  166  CCTGCAGCCACCCCTGCCCCTACCGCTACTCCTCCGTCTTCCTCTCCTTCTCCGTCGTCT  225

Query  283  GATG-CCCCTACCGCTTCTCCACCTGCACCGGAAGGTCCCGGAGTTAGCCCCGGCGAACT  341
            |||| |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct  226  GATGTCCCC-ACCGCTTCTCCACCTGCACCGGAAGGTCCCGGAGTTAGTCCCGGTGATCT  284

Query  342  AGCCCCGACACCTTCCGATGCTTCCGCTCCTCCACCTAACGCCGCTTTAACCAACAAAGC  401
            | ||||||||||||| || ||| ||||||||||||||||||| |||||  ||||||||||
Sbjct  285  ATCCCCGACACCTTCTGACGCTGCCGCTCCTCCACCTAACGCAGCTTTCTCCAACAAAGC  344

Query  402  TTTCGTCGTCGGTTCAC-TTGTCGCCGCGATTATTTACGCCGTCGTGTTGGCTTAGGATC  460
            ||||||||||||| | | || | || ||| |||||| ||||||||| |||||||||||||
Sbjct  345  TTTCGTCGTCGGTAC-CGTTTTTGCGGCGGTTATTTCCGCCGTCGTTTTGGCTTAGGATC  403

Query  461  TCATTGTTTACATCTT  476
            ||||||||||||||||
Sbjct  404  TCATTGTTTACATCTT  419



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829729410


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5