BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65400.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332756 jgi|Araly1|332756|fgenesh1_pm.C_scaffold_8002099 1166 0.0
> Ahg332756 jgi|Araly1|332756|fgenesh1_pm.C_scaffold_8002099
Length=762
Score = 1166 bits (631), Expect = 0.0
Identities = 721/764 (94%), Gaps = 7/764 (1%)
Strand=Plus/Plus
Query 23 ATGTTAGGATACTCCTATCCTTGTTTCCAAACGGGATTACGG-TTAACG--ACGGCGATG 79
||||| ||| |||| ||||||||||||||||||||| ||||| |||| | |||||||||
Sbjct 1 ATGTTGGGACACTCATATCCTTGTTTCCAAACGGGACTACGGTTTAAGGTAACGGCGATG 60
Query 80 GCGCCGGA-AATTCACCTGAAACCGAAGAACCCTAGAATTTTATGCCTTCATGGATTCAG 138
|||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GCGCCGGAGAATT-ACCGGAAACCGAAGAACCCTCGAATTTTATGCCTTCATGGATTCAG 119
Query 139 AACTAGTGGTCGGATTCTCCAAGCCGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 198
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 AACCAGTGGTCTGATTCTCCAAGCGGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 179
Query 199 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGGAAATCGGACGTCGAGCG 258
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 180 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGAAAATCTGACGTCGAGCG 239
Query 259 TTTCTTTGACCCACCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 318
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTCTTTGATCCGCCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 299
Query 319 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 359
Query 379 TGGTCTTCTTGGTTTTTCTCAGGGAGCTTTTCTAACTGCAGCTATTCCTGGAATGCAAGA 438
||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 360 TGGTCTTCTTGGTTTCTCACAGGGAGCTTTTCTAACTGCGGCTATTCCGGGAATGCAAGA 419
Query 439 ACAGGGATCGGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTAGTTATCATTTCTGGAGC 498
||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 420 ACAGGGAACTGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTGGTTATAATATCTGGAGC 479
Query 499 GAAAATT-CCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 557
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 -AAAATTTCCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 538
Query 558 CAGTTCGTTGCCCATCACTCCACTTCATAGGTGAGAGGGATTTCCTGAAGATAGAAGGTG 617
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 539 CAGTTCGTTGCCCGTCACTCCACTTCATAGGTGAAAGGGATTTCCTGAAGACAGAAGGTG 598
Query 618 AAGTGCTTGTAGAATCATTCGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 677
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGTTCTTGTAGAATCATTTGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 658
Query 678 TACCAAAACTCGATACTAAAGCTGAGGAGACAATGTTGAGTTTCTTCCAGAGCATTAGGC 737
|||| ||||||||||||||||||||||||| | |||| |||||||||||||| |||||||
Sbjct 659 TACCGAAACTCGATACTAAAGCTGAGGAGAGAGTGTTAAGTTTCTTCCAGAGGATTAGGC 718
Query 738 AGATGCTTTCTGATGAATCAGGTTCTGTAAGAAGCTTGATGTGA 781
||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 719 AGATGCTTTCTGATGAACCAGCTCCTGTAAGAAGCTTGATGTGA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5