BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65400.1 Length=978 Score E Sequences producing significant alignments: (Bits) Value Ahg332756 jgi|Araly1|332756|fgenesh1_pm.C_scaffold_8002099 1166 0.0 > Ahg332756 jgi|Araly1|332756|fgenesh1_pm.C_scaffold_8002099 Length=762 Score = 1166 bits (631), Expect = 0.0 Identities = 721/764 (94%), Gaps = 7/764 (1%) Strand=Plus/Plus Query 23 ATGTTAGGATACTCCTATCCTTGTTTCCAAACGGGATTACGG-TTAACG--ACGGCGATG 79 ||||| ||| |||| ||||||||||||||||||||| ||||| |||| | ||||||||| Sbjct 1 ATGTTGGGACACTCATATCCTTGTTTCCAAACGGGACTACGGTTTAAGGTAACGGCGATG 60 Query 80 GCGCCGGA-AATTCACCTGAAACCGAAGAACCCTAGAATTTTATGCCTTCATGGATTCAG 138 |||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 61 GCGCCGGAGAATT-ACCGGAAACCGAAGAACCCTCGAATTTTATGCCTTCATGGATTCAG 119 Query 139 AACTAGTGGTCGGATTCTCCAAGCCGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 198 ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 120 AACCAGTGGTCTGATTCTCCAAGCGGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 179 Query 199 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGGAAATCGGACGTCGAGCG 258 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 180 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGAAAATCTGACGTCGAGCG 239 Query 259 TTTCTTTGACCCACCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 318 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTTCTTTGATCCGCCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 299 Query 319 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 359 Query 379 TGGTCTTCTTGGTTTTTCTCAGGGAGCTTTTCTAACTGCAGCTATTCCTGGAATGCAAGA 438 ||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 360 TGGTCTTCTTGGTTTCTCACAGGGAGCTTTTCTAACTGCGGCTATTCCGGGAATGCAAGA 419 Query 439 ACAGGGATCGGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTAGTTATCATTTCTGGAGC 498 ||||||| | |||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 420 ACAGGGAACTGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTGGTTATAATATCTGGAGC 479 Query 499 GAAAATT-CCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 557 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 -AAAATTTCCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 538 Query 558 CAGTTCGTTGCCCATCACTCCACTTCATAGGTGAGAGGGATTTCCTGAAGATAGAAGGTG 617 ||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 539 CAGTTCGTTGCCCGTCACTCCACTTCATAGGTGAAAGGGATTTCCTGAAGACAGAAGGTG 598 Query 618 AAGTGCTTGTAGAATCATTCGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 677 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 599 AAGTTCTTGTAGAATCATTTGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 658 Query 678 TACCAAAACTCGATACTAAAGCTGAGGAGACAATGTTGAGTTTCTTCCAGAGCATTAGGC 737 |||| ||||||||||||||||||||||||| | |||| |||||||||||||| ||||||| Sbjct 659 TACCGAAACTCGATACTAAAGCTGAGGAGAGAGTGTTAAGTTTCTTCCAGAGGATTAGGC 718 Query 738 AGATGCTTTCTGATGAATCAGGTTCTGTAAGAAGCTTGATGTGA 781 ||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 719 AGATGCTTTCTGATGAACCAGCTCCTGTAAGAAGCTTGATGTGA 762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36331139901 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5